LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Stsc181259g00023	ATGAATGCAAGGGAACCTAAATTTGTTCGGTTTGAAGACTGGAGGTCAACGTCATCGGAGCAAGAGGGTTCTGTTAATAATGGATATAACAAAAGAAAAGGTATGCCAAGTGTAGGTGCTGTTTTGAAGAGTATTGGAAGGAAACTGGAGAATGGCTCAGAGAAGTTCAAGAACTTCAGGAAACCTTCAACTGTTCATCCTGTAAGTGATAGACCAAAAGAGAATCTGGCTTCTATAGGAAGCAAAATTCTTGATCCACAAGGACCACTCCTTCAGAAATGGAACAAGATTTTCGTGATTACATGTGTGTTCGCAATCTCTGTGGATCCGCTCTTCTTCTACATTCCAGTGATCAAAGACAAAGAGAAATGTCTCAAGTTGGATGGCACGTTGCGGATCACCACTAGTGTTCTTCGAACATTCTTTGATCTTTTCTACATTCTTCGCATAATCTTTCAGTTCCGAACGGGTTTTATTGCCCCGTCTACTCGTGTTTTTGGAAGGGGTGAGGTGAATCATGATCCGGTGGCTATAGTGAAAAGATACTTAAGTTCATATTTCATCATTGACATGCTCTCAATTATTCCATTTCCGCAGGTGCTGGTTTTAGCTGTAATTCCAAAGATGAAAGGCTCACCGTTTCTAGCAAAGGACTTGTTGAAGTATGTAATATTGGTCCAATATGTGCCAAGACTTTTTCGGATATGGCCATTATTCAGAGAAGTAACCAGAACTTCTGGTATATTGACTGAGACTGCATGGGCTGGGGCTGTCTTTAATCTTGGTCTCTATATGCTAGCAAGTCATGTTGTTGGAGCTAACTGGTATCTGCTTTCAGTAGAATCAGAGGTGAGATGCTGGCGCAAAGTGATGGAAAATAATACTCAGCATCACTTTAAAAAATCAGACCTGGGCTGTGGACCTGACAGAGCATTTGTCAGATCACTTCTCAGTAAAAATACTAGTTGTCCTTTCATTGACCCTGATCAAAACCCAGACCCAAATGCCTTTGATTTTGGAATATTCAATGATGCTTTACAATCATCTGTGGTAGATTCTGAAACAGATTTTCTTAAGAAGTTTTTCTACTGCTTTTGGTGGGGTTTACGCAATTTGAGTTCTGTTGGACAAAACCTCCAGACAAGCACTTACGTTTTGGAGATACTCTTTGCCATCTTTATAGCCATTGCTGGATTGGTTTTATTTGCATTGCTTATTGGAAACATGCAGAAATATTTGCAATCTACAACTGTTAGAGTTGAGGAGATGAGAGTCAAGAGGCGCGACGCAGAAAGGTGGATGTCTCATCGTATGCTGCCTGAGAGACTGAGGGACAGAGTTAGACGGTATGAACAATACAAATGGCAAGAAAATAGGGGTGTTGAGGAGGAGGCATTAATTCGCACCCTCCCTAAAGATCTAAGAAGGGACATAAAGCGTCATCTCTGCTTGGCCTTGGTTAAAAAAGTGCCAATATTTGAGAAAATGGATGAGCAGTTGTTGGATGCAATGTGTGATAGACTGAAGCCAGTCCTTTATACAGAGAAGAGCTACATTGTTCGCGAAGGAGATCCAGTTGATGAGATGCTCTTTGTCATGCGTGGAAACCTCGCTACCATGACAACAAATGGTGGAAGAACTGGTTTCTTCAACTACATGGTTCTTGAGGCCGGTGACTTCTGTGGAGAGGAGCTGCTAACATGGGCCCTGGATCCTCACTCCTCCACAAATCTTCCCACCTCAACCAGAACAGTAGAAACCATATCAGAAGTTGAAGCCTTTGCTTTCATGGCCGATGACTTGAAGTTTGTTGCATCCCAATTCCGACGTCTTCAGAACAAACAGCTCCAACACACTTTCAGGTACTATTCGATGCAATGGAAGACATGGGCTGCCTGTTTTATACAAGTAGCATGGCGTCGATACTGGAAAAAGAAAGTTGAGAGGCAATTACGTGAAGCAGAAGCCAGCCTACAAGGTGCCTTTGTAAACGAGGATGAATCCTCTCTAAGCCTTGGTGCAACCATATATGCATCCAGGTTTGCTGCTAATGCTTTGAGAAACTTGAGGGAAAACAGCGAACGCAACAAGAGAATGCCACAGAGACTACCTCTGCTTCCTCCAAAGCCTGCTGAGCCAGATTTCTCTACTCAGGAGCACTAG	2163	0.4272	MNAREPKFVRFEDWRSTSSEQEGSVNNGYNKRKGMPSVGAVLKSIGRKLENGSEKFKNFRKPSTVHPVSDRPKENLASIGSKILDPQGPLLQKWNKIFVITCVFAISVDPLFFYIPVIKDKEKCLKLDGTLRITTSVLRTFFDLFYILRIIFQFRTGFIAPSTRVFGRGEVNHDPVAIVKRYLSSYFIIDMLSIIPFPQVLVLAVIPKMKGSPFLAKDLLKYVILVQYVPRLFRIWPLFREVTRTSGILTETAWAGAVFNLGLYMLASHVVGANWYLLSVESEVRCWRKVMENNTQHHFKKSDLGCGPDRAFVRSLLSKNTSCPFIDPDQNPDPNAFDFGIFNDALQSSVVDSETDFLKKFFYCFWWGLRNLSSVGQNLQTSTYVLEILFAIFIAIAGLVLFALLIGNMQKYLQSTTVRVEEMRVKRRDAERWMSHRMLPERLRDRVRRYEQYKWQENRGVEEEALIRTLPKDLRRDIKRHLCLALVKKVPIFEKMDEQLLDAMCDRLKPVLYTEKSYIVREGDPVDEMLFVMRGNLATMTTNGGRTGFFNYMVLEAGDFCGEELLTWALDPHSSTNLPTSTRTVETISEVEAFAFMADDLKFVASQFRRLQNKQLQHTFRYYSMQWKTWAACFIQVAWRRYWKKKVERQLREAEASLQGAFVNEDESSLSLGATIYASRFAANALRNLRENSERNKRMPQRLPLLPPKPAEPDFSTQEH	720

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Stsc181259g00023	720	Coils	Coil	644	664	-	-
	Stsc181259g00023	720	CDD	CAP_ED	492	623	IPR000595	-
	Stsc181259g00023	720	Gene3D	Jelly Rolls	490	610	IPR014710	-
	Stsc181259g00023	720	SMART	cnmp_10	492	623	IPR000595	-
	Stsc181259g00023	720	MobiDBLite	consensus disorder prediction	692	720	-	-
	Stsc181259g00023	720	FunFam	Cyclic nucleotide-gated ion channel 1	419	483	-	-
	Stsc181259g00023	720	Gene3D	-	96	416	-	-
	Stsc181259g00023	720	MobiDBLite	consensus disorder prediction	12	32	-	-
	Stsc181259g00023	720	SUPERFAMILY	cAMP-binding domain-like	421	616	IPR018490	-
	Stsc181259g00023	720	Pfam	Cyclic nucleotide-binding domain	512	602	IPR000595	-
	Stsc181259g00023	720	ProSiteProfiles	cAMP/cGMP binding motif profile.	492	576	IPR000595	-
	Stsc181259g00023	720	Pfam	Ion transport protein	94	420	IPR005821	GO:0005216\|GO:0006811\|GO:0016020\|GO:0055085
	Stsc181259g00023	720	SUPERFAMILY	Voltage-gated potassium channels	85	414	-	-
	Stsc181259g00023	720	Gene3D	Helix hairpin bin	419	483	-	-
	Stsc181259g00023	720	FunFam	Cyclic nucleotide-gated ion channel 1	490	608	-	-
	Stsc181259g00023	720	PANTHER	CYCLIC NUCLEOTIDE-GATED ION CHANNEL 15-RELATED-RELATED	61	715	-	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Stsc181259g00023	Stsc-Chr181259	113338	117059	Dispersed/Transposed

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Stsc181259g00023	1	719	Ion Channels	AT5G53130	63.724	0.0	917

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Stsc181259g00023	K05391		-	gmx:100797784	1066.22