Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc181259g00009 ATGGAATTGGAATATACCAATGGGGAACAAAATGGTCTCATCAATGAACTTATCCAAGGCAAGGAGCTAGCAAAGCAGCTATGCAACACTCTCCTCTCTTCTTCTTCTTCTTCTTCTCCATCATCATCATCATCCAATGAATTCTTAATTGAGAAGATACTTTCCACCTATGAGAAAGCCCTCACCATGCTTAACTCTCACTCCAATCTCATCTCTACAAATGGAAGCCCTTCAAGGAGTGACCTCATTCATGATGATGAATTCAAGCACAAACCCCCCTCCAATAAGAGGAAGACTATGCCAAAATGGACAGAGAAAGTGAAGGTATGCTCACAAACAGGACTTGAAGGGTCTTTGGATGATGGCTATTGCTGGAGAAAATATGGCCAAAAGGATATTCTTGGAGCCAAGTTCCCAAGAGGATATTACAGATGCACATATAGAAATGTACAAGGGTGCCTTGCAACAAAGCAAGTCCAAAAATCAGATGAAGACCCAACAATGATTGAGGTGAACTACAGAGGAAGACACACCTGTACTCAATCTAAGAATTCCAACAAAGTATTCTCATCCAAAAAGAAGTTGCCTTTGTTGGAGAAGAACCAATTCCACAAGCTCCAAAACAACCAACCACAAAAGCAGGAGAAAATAGAACAAACCCAAGTGGAAATCTTCAACTTTGAAGCAAAGCTTGAGTTGGACACCAACACCACAACCAAGGATGATGATGATATCTTCTCATGGTTCTTGGAAAGCTTTTCTCCTGATACAGAACCATTCATATCACCATCAACTTCAGAATCAGACCTTTTCTGTTTGTCACCATGCCAATTTGGAAGCAGCAATAGTAATGGAATAGTCCAAACTTCAGAATCTGAAATCACTGAGATACTTTCAGCTCCAACCTCGGTAACCAATTCCCCAATCATGGATTTCGATTTGTTTCTTGATAAAGAAGACTTTGACACCGTATTCCCTTTCAACACGCCTGAATATTCTTCTTCATGA 1008 0.4038 MELEYTNGEQNGLINELIQGKELAKQLCNTLLSSSSSSSPSSSSSNEFLIEKILSTYEKALTMLNSHSNLISTNGSPSRSDLIHDDEFKHKPPSNKRKTMPKWTEKVKVCSQTGLEGSLDDGYCWRKYGQKDILGAKFPRGYYRCTYRNVQGCLATKQVQKSDEDPTMIEVNYRGRHTCTQSKNSNKVFSSKKKLPLLEKNQFHKLQNNQPQKQEKIEQTQVEIFNFEAKLELDTNTTTKDDDDIFSWFLESFSPDTEPFISPSTSESDLFCLSPCQFGSSNSNGIVQTSESEITEILSAPTSVTNSPIMDFDLFLDKEDFDTVFPFNTPEYSSS 335
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc181259g00009 335 SUPERFAMILY WRKY DNA-binding domain 118 181 IPR036576 GO:0003700|GO:0006355|GO:0043565
Stsc181259g00009 335 Gene3D WRKY domain 104 182 IPR036576 GO:0003700|GO:0006355|GO:0043565
Stsc181259g00009 335 MobiDBLite consensus disorder prediction 80 102 - -
Stsc181259g00009 335 Pfam WRKY DNA -binding domain 120 179 IPR003657 GO:0003700|GO:0006355|GO:0043565
Stsc181259g00009 335 ProSiteProfiles WRKY domain profile. 114 177 IPR003657 GO:0003700|GO:0006355|GO:0043565
Stsc181259g00009 335 PANTHER WRKY TRANSCRIPTION FACTOR 30-RELATED-RELATED 8 323 IPR044810 GO:0003700
Stsc181259g00009 335 FunFam WRKY transcription factor 53 105 182 - -
Stsc181259g00009 335 SMART WRKY_cls 119 181 IPR003657 GO:0003700|GO:0006355|GO:0043565
Stsc181259g00009 335 MobiDBLite consensus disorder prediction 72 102 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc181259g00009 Stsc-Chr181259 43076 44675 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc181259g00009 1 270 WRKY Transcription Factor Family AT5G24110 36.299 1.27e-50 169
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF WRKY Stsc181259g00009 WRKY 3.6e-25 CL0274
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc181259g00009 - - aprc:113849885 334.724