Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc181258g00023 ATGAACTTGAAGAGTAATTACAGCATAACCTCTGCTATATCCACTCTCCTTTACCTTTCTTTCTTGTTCCTCTCAGACATAGCCATATCCATTGAAGCTTATGTTCCAGTTGATAGCTTCAGCATCAACTGTGGCTCAACTGGCAATTCCTCCGATGGTGAAAGGTCATGGAAAGGAGACATAGACTCAAAGGTTTTAACTCTTCAAGACACAAACACAATCGTTGCTCAACCAACCACACAACCATCTTCAAATCAAGTTCCCTATACCACCGCTCTCTTGTCCAAATCTGAATTCAGTTATTCCATCCCGGTTTCACTTGGCCTCAAATTTGTGCGTCTCTTCTTCTACCCTGCTTCTTACCCTGGCTTTGACCGTTATAACGCTGTCTTCACTGTCAAATCGGAGGGGTTCACACTCCTCAAGGATTTCAATGCTTCGCTTAACGCTGATGCTGCAAACAAAGACACCATATTTAAAGAATACATAATCAACGTGGATGATGTGCAGAGGATCAACCTGATATTCACTCCAAACACATCCCATCCAAACTCTTACGCGTTTGTGAACGGAATAGAGGTGGTTTCCATGCCCATTGATCTCTACTTCACTGTATTTGTGGGTCATCCAGGCATCCAATACAATATGGAAAACACTCGTGCCCTGGAGACAGATTACAGAATCAAAGTTGGCGGCAACACAATCACACCAAAAGGCGATACTGGCATGCTGCGCAACTGGGAAGGAGATGATGCCGATTATTTAACAACGTCATCTCCTGATCAGGCTAGTCTACCCGGTGATTTGACTGGAAAGATGAACATCACAGTGAAACCTGATTATGAAGCACCCATTGAACTCTACAGAACATCTCGAGATATGGGCAGGAACAAAACTTTCAACCAAATGAATAATTTGACTTGGGAGTTTCCCGTTGACTCTGGCTTCAACTACATGATCAGGCTTCACTTTTGCGAGCTAGACCCAAACATTACCAGAGCCGGTGACAGAGTGTTCAACATCTACGTAGCAGGCCAGTTGGTGGAGGACTCTGCCGACGTTCTAAGATGGAGCAAGCAAAAGGGAATTGCTGTACAGAGAGACTACGTTGTTGCTGTCCAAGGAACTCAGAAAAGTACTAACCTTTCACTCCAACTGCACCCGTCTCAACAAAGCCAAATATCATACGGCGACCCTTTCTTGAACGGCCTTGAAATCTTCAAAATTAGTGACCCTGTGTCTAACAACCTGGCAGGACCCAACCCATTTACCCCACCACAGTACTCTGTTCAAACCTCAAATTCAAACAAGAGGAAAATAATAATCGGCCTAGTTGCAGGATTCAGTTTTCTTTTTTCCATTGTTGTCTTCTTCTTCCTCCTTGGAAAACAGAAGAAAAAGAGCACAAAAAGATCTTCCTCCCGAATAGCCAACACTCAAACCTTACCATTGCCATCCGGTCTTTGCCGTCGGTTTTCCATGGCTGAGATGGAAACAGCCACCAATAACTTCGAGGAGCTTCTCCTCATTGGAGTCGGAGGGTTCGGCAACGTCTACAAAGGCCTCATCGACGAAGGTTCAACACCAGTTGCAATCAAACGGTTAAAACAAGGTTCACAGCAAGGGGTTCAAGAGTTCAGAACCGAAATTCAGATGCTCTCTCAACTCCGCCATCTCCATCTTGTGTCTCTCATTGGTTACTGCTGCGAGAGCAACGAGATGATGTTGGTCTATGATTTCATGCCACGTGGAACCTTACAAGATCATCTCTACAATAACATCGACAATCCCTCCCTCTCATGGAAGCAACGGTTACAAATCTGCATAGGAGCAGCGAAAGGGCTGCATTATCTCCATGCAGGTGCGGTGCACAATATCATTCACCGCGATGTCAAGACCACCAACATCTTATTGGATGAGAAGTGGGTCGCCAAGGTTTCGGATTTCGGGTTGTCCAAAATAGGGCCCACTGGCATTTCAAGAACCCACATTAGCACTCTTGTGAAGGGTAGCCTCGGGTATTTGGACCCGGAATATTATAAACGACAGCGTTTAACTCTCAAGTCTGACGTGTACTCCTTCGGTGTGGTGCTTCTTGAGGTGCTGTGTGGGAGAAAGCCTTTGATGAGGACGCTGGAAAAGCAACAGATGTCACTCGCTCATTGGGCTGTATTTTGTTATGAGAATGCCACGTTGGATCAGATTGTGGACAAAGCGTTAGAGGGTCAGATTGCAGAAGAGTGCTTGGCGAGGTTCGGTGAGATTGCTGTGAGTTGTTTGCATGAAGATGGTTCAAAACGACCCTCCATGGATGAAATTGTTTGGTGTTTGGAGTTTGCATTGCAACTGCAAGAGAGTGCTGATGAGATGCAGCAAGAACATCATCTTGTTACTGCAACCCAAAATCTTGAAGGGGATAATGCCATATCTATAATAGTATAA 2442 0.4509 MNLKSNYSITSAISTLLYLSFLFLSDIAISIEAYVPVDSFSINCGSTGNSSDGERSWKGDIDSKVLTLQDTNTIVAQPTTQPSSNQVPYTTALLSKSEFSYSIPVSLGLKFVRLFFYPASYPGFDRYNAVFTVKSEGFTLLKDFNASLNADAANKDTIFKEYIINVDDVQRINLIFTPNTSHPNSYAFVNGIEVVSMPIDLYFTVFVGHPGIQYNMENTRALETDYRIKVGGNTITPKGDTGMLRNWEGDDADYLTTSSPDQASLPGDLTGKMNITVKPDYEAPIELYRTSRDMGRNKTFNQMNNLTWEFPVDSGFNYMIRLHFCELDPNITRAGDRVFNIYVAGQLVEDSADVLRWSKQKGIAVQRDYVVAVQGTQKSTNLSLQLHPSQQSQISYGDPFLNGLEIFKISDPVSNNLAGPNPFTPPQYSVQTSNSNKRKIIIGLVAGFSFLFSIVVFFFLLGKQKKKSTKRSSSRIANTQTLPLPSGLCRRFSMAEMETATNNFEELLLIGVGGFGNVYKGLIDEGSTPVAIKRLKQGSQQGVQEFRTEIQMLSQLRHLHLVSLIGYCCESNEMMLVYDFMPRGTLQDHLYNNIDNPSLSWKQRLQICIGAAKGLHYLHAGAVHNIIHRDVKTTNILLDEKWVAKVSDFGLSKIGPTGISRTHISTLVKGSLGYLDPEYYKRQRLTLKSDVYSFGVVLLEVLCGRKPLMRTLEKQQMSLAHWAVFCYENATLDQIVDKALEGQIAEECLARFGEIAVSCLHEDGSKRPSMDEIVWCLEFALQLQESADEMQQEHHLVTATQNLEGDNAISIIV 813
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc181258g00023 813 ProSitePatterns Serine/Threonine protein kinases active-site signature. 626 638 IPR008271 GO:0004672|GO:0006468
Stsc181258g00023 813 FunFam FERONIA receptor-like kinase 220 410 - -
Stsc181258g00023 813 FunFam Receptor-like protein kinase FERONIA 476 580 - -
Stsc181258g00023 813 CDD STKc_IRAK 510 774 - -
Stsc181258g00023 813 ProSiteProfiles Protein kinase domain profile. 504 780 IPR000719 GO:0004672|GO:0005524|GO:0006468
Stsc181258g00023 813 ProSitePatterns Protein kinases ATP-binding region signature. 510 533 IPR017441 GO:0005524
Stsc181258g00023 813 FunFam FERONIA receptor-like kinase 39 198 - -
Stsc181258g00023 813 Gene3D Transferase(Phosphotransferase) domain 1 581 805 - -
Stsc181258g00023 813 SUPERFAMILY Protein kinase-like (PK-like) 470 779 IPR011009 -
Stsc181258g00023 813 PANTHER OS03G0124300 PROTEIN-RELATED 15 471 IPR046957 GO:0004672
Stsc181258g00023 813 Gene3D - 39 199 - -
Stsc181258g00023 813 Gene3D - 221 410 - -
Stsc181258g00023 813 SMART serkin_6 504 780 IPR000719 GO:0004672|GO:0005524|GO:0006468
Stsc181258g00023 813 Pfam Protein tyrosine and serine/threonine kinase 510 776 IPR001245 GO:0004672|GO:0006468
Stsc181258g00023 813 Gene3D Phosphorylase Kinase; domain 1 489 580 - -
Stsc181258g00023 813 FunFam Receptor-like protein kinase FERONIA 581 799 - -
Stsc181258g00023 813 Pfam Malectin-like domain 42 409 IPR024788 -
Stsc181258g00023 813 Coils Coil 813 813 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc181258g00023 Stsc-Chr181258 170497 172938 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc181258g00023 29 789 Receptor kinase-like Gene Family AT3G51550 48.208 0.0 711
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_CrRLK1L-1 Stsc181258g00023 Malectin_like 2.7e-40 CL0202
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc181258g00023 - - gsj:114381619 917.531