Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc181258g00022 ATGTTGTTGTCTTCTTCCCTTCTCAACTTCCGATTCTTCATCAAACCGCCTCCATGCATTTTCCTCTTCTTCCTTCTCTCTTTCACTTCCTTCACTTCAACAGAAGCTTATGATGTGCTTGACCCAAACGGAAATATCACAATCAGATGGGATATCATAAGCTGGACACCAGATGGTTATGTTGCTGTTATCACATTAAACAATTTCCAACAATACCGTCATATCTCGGCGCCGGGGTGGTCACTAGGATGGACATGGGCAAAGAAAGAGGTAATTTGGAGCATGATGGGAGGGCAGACTACCGAGCAAGGCGATTGCTCGAAATTCAAGGCAAGCCCCCCACCACATTGCTGTAAAAAGGATCCAACTGTTGTGGATTTACTTCCCGGAACACCTTACAATCAACAGATTGCAAATTGCTGCAAAGGTGGTGTACTCAGCTCATGGGCACAGGATCCTGTCAATGCCATTGCAGCATTTCAAATCAGTGTTGGTAGAGCTGGAACCTCTAACAGAACAGTCAAAGTTCCCAAGAACTTCACCTTGAAGGCACCAGGACCGGGCTATACTTGTGGCCCGGGGAAAATCGTTCCACCTACTCAATTCTTAACAGGAGACAAAAGGAGAAGGACTCAAGCTCTCATGACATGGAATGTGACATGCATGTATTCGCAATTTCTAGCTCAGAGAACTCCTACTTGCTGTGTTTCACTCTCATCTTTCTATAATGATACCATTGTACCTTGCCCGACGTGTTCGTGTGGCTGCCAAGGCAACTCTTCTCAATCCGGGAACTGTGTAGATCCGGATACACCGCATTTGGCATCCGTCGTTGCTAACCCTGCGAAGAGTTCTCCTTTGGTTCAATGCACTCGTCATATGTGTCCTATCCGAGTTCATTGGCATGTTAAGCTTAACTACAAGGAGTACTGGCGCGTGAAGGTTACTATTACTAATTTCAATTACAAGATGAACTATACAGATTGGAACTTGGTTATTCAACACCCGAACTTCGACAATCTGACTCAGCTTTTTAGCTTTAATTACAAGTCATTAACACCATATGGCACAATAAATGATACTGCATTGCTATGGGGAATCAAGTTCTACAATGATTTGCTCATGGAAGCTGGTCCTATGGGTAATGTTCAATCAGAGCTACTTTTTCGAAAGGATAAATCAACTTTTACTTTCGACAAAGGCTGGGCGTTTCCTCGGAGGATCTATTTCAATGGGGACAACTGTGTGATGCCACCACCTGATGCTTATCCGTGGTTGCCGAATGCTAGTTCCCGGCAAGAGGTTTCCTTGCTAGCTTTGGTGCTGACTTCCTTTGTAGCCTTGGCATTATATGGATATTCTTAA 1365 0.444 MLLSSSLLNFRFFIKPPPCIFLFFLLSFTSFTSTEAYDVLDPNGNITIRWDIISWTPDGYVAVITLNNFQQYRHISAPGWSLGWTWAKKEVIWSMMGGQTTEQGDCSKFKASPPPHCCKKDPTVVDLLPGTPYNQQIANCCKGGVLSSWAQDPVNAIAAFQISVGRAGTSNRTVKVPKNFTLKAPGPGYTCGPGKIVPPTQFLTGDKRRRTQALMTWNVTCMYSQFLAQRTPTCCVSLSSFYNDTIVPCPTCSCGCQGNSSQSGNCVDPDTPHLASVVANPAKSSPLVQCTRHMCPIRVHWHVKLNYKEYWRVKVTITNFNYKMNYTDWNLVIQHPNFDNLTQLFSFNYKSLTPYGTINDTALLWGIKFYNDLLMEAGPMGNVQSELLFRKDKSTFTFDKGWAFPRRIYFNGDNCVMPPPDAYPWLPNASSRQEVSLLALVLTSFVALALYGYS 454
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc181258g00022 454 PANTHER PROTEIN COBRA 24 443 IPR006918 GO:0010215|GO:0016020
Stsc181258g00022 454 PIRSF COBRA 11 453 IPR006918 GO:0010215|GO:0016020
Stsc181258g00022 454 Pfam COBRA-like protein 60 224 IPR006918 GO:0010215|GO:0016020
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc181258g00022 Stsc-Chr181258 164425 167076 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc181258g00022 1 452 COBRA Gene Family AT3G02210 72.088 0.0 704
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc181258g00022 - - gmx:100783820 805.438