Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc181258g00012 ATGGATGGAGAGATGAACAGATACATTCTAATGAATGAACCAAAAGGGCTTGTTCCAGGATACCCTAAATCCATGGTAGACATCTTGGGAGAGCTCAACATTACAGCTGTTCATGGCTCCACTCACAAGTACTTGAGAGGTGCCTTGCTTTCCATCATTAGCCCCATCATGATCAGAGATCAGCTTTTGCCTACACTTGATCAGCTCGTGAGATCCTACCTTAGCAATTGGGACAATCAAGTCATCGACATCCAACAAAAAATCAAAGAGATGGCCTTCCTTTCATCACTCCGGCAGGTTGTAAGCAAAGAATCAATCAGTATAAGAGATCGAATCTCGCGGGAGTTCTTCAAACTAGTCTTAGGAACCCTTTCTCTGCCTATTCCCATTCCGGGGACGAATTATAGTCGTGCATTTCAGGCAAGGAAAGCAATTGTGAGCATTATAAGAGAAGTAATGGAAGAAAGGAGAAAATCCCAAGAAACACACAAAGACATGCTTGCTGGATTGATGGGAAATGATGAGAGTAGATACAAACTAAGTGATGAACAAATCATTGATCTAGTGATCACAATTATGTTTTCTGGTCATGAAAGTGTTTCAACTACGTCAATGATGGCACTCAAGTATCTTCACGACCATCCCAACGCACTTCAACAACTCAGAGAAGAGCATTTGGCCATTAGACAAAGGAAAAAACCAGATGAACCAATTGATTTCAACGATATCAAGTCAATGAAGTTTACTCGCGCGGTGATTTTTGAGACCCTTAGATTGGCCTCAGTAATTAATGGGGTCTTTAGGAAAACCACTGATGAAATGGAACTAAATGGTTATTTGATTCCCAAAGGGTGGAAGATACATGTGTACACAAGAGAGACAAATTATGACCCTTCTCTATATCCTGAACCACTGAAGTTCAACCCATGGAGATGGCTGGAGAAGAACCTAGAATCAAATAACCACTGCTTGGTATTTGGAGGAGGTACCAGATTGTGTCCAGGGAAAGAGTTGGGGATTGTAGAAATTTCAACTTTCTTGCACTATTTTGTTACAAGATACAGGTGGGAAGAAGTAGGAGGAGATACACTACTGATATTTCCAAAAGTCCAGGCACCTAATGGACTGCACATAAGGGTGTCATCCTACTAA 1152 0.4132 MDGEMNRYILMNEPKGLVPGYPKSMVDILGELNITAVHGSTHKYLRGALLSIISPIMIRDQLLPTLDQLVRSYLSNWDNQVIDIQQKIKEMAFLSSLRQVVSKESISIRDRISREFFKLVLGTLSLPIPIPGTNYSRAFQARKAIVSIIREVMEERRKSQETHKDMLAGLMGNDESRYKLSDEQIIDLVITIMFSGHESVSTTSMMALKYLHDHPNALQQLREEHLAIRQRKKPDEPIDFNDIKSMKFTRAVIFETLRLASVINGVFRKTTDEMELNGYLIPKGWKIHVYTRETNYDPSLYPEPLKFNPWRWLEKNLESNNHCLVFGGGTRLCPGKELGIVEISTFLHYFVTRYRWEEVGGDTLLIFPKVQAPNGLHIRVSSY 383
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc181258g00012 383 PRINTS P450 superfamily signature 195 212 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Stsc181258g00012 383 PRINTS P450 superfamily signature 324 333 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Stsc181258g00012 383 PRINTS P450 superfamily signature 333 344 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Stsc181258g00012 383 PRINTS P450 superfamily signature 251 262 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Stsc181258g00012 383 PRINTS E-class P450 group IV signature 295 313 IPR002403 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Stsc181258g00012 383 PRINTS E-class P450 group IV signature 246 262 IPR002403 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Stsc181258g00012 383 PRINTS E-class P450 group IV signature 279 293 IPR002403 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Stsc181258g00012 383 PRINTS E-class P450 group IV signature 186 212 IPR002403 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Stsc181258g00012 383 PRINTS E-class P450 group IV signature 333 351 IPR002403 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Stsc181258g00012 383 Pfam Cytochrome P450 104 363 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Stsc181258g00012 383 SUPERFAMILY Cytochrome P450 2 380 IPR036396 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Stsc181258g00012 383 ProSitePatterns Cytochrome P450 cysteine heme-iron ligand signature. 326 335 IPR017972 GO:0005506|GO:0016705
Stsc181258g00012 383 PANTHER CYTOCHROME P450 26 2 360 - -
Stsc181258g00012 383 Gene3D Cytochrome P450 1 382 IPR036396 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Stsc181258g00012 383 CDD CYP90-like 1 381 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc181258g00012 Stsc-Chr181258 116808 119848 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc181258g00012 1 383 Cytochrome P450 AT5G38970 64.323 0.0 535
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc181258g00012 K09590 - gmx:100805958 602.438