Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc181258g00006 ATGGGAAGGGGAAGAGTGGAACTGAAAAGAATAGAGAACAAGATAAACAGGCAGGTGACTTTTGCAAAGAGAAGAAATGGACTTCTCAAGAAAGCTTATGAGCTTTCAGTTCTCTGTGATGCTGAAGTTGCTCTCATCATCTTCTCTAACCGTGGAAAGCTTTATGAGTTTTGCAGCACCAATAGCATGCTCAAAACACTTGAAAGGTACCAAAATTGCAGCTATGGTGCAGTGGAAGTCAACAAACCTGCCAAAGAGCTTGAGAATAGCTACCGTGAGTATCTAAAACTGAAAGCAAGATTTGAATCTCTTCAAAGGACCCAGAGGAACCTTCTTGGTGAAGACTTAGGTCCATTAGGTACCAAAGAGCTTGAGCAGCTTGAGCGTCAACTTGATACATCTCTCAGGCAAGTCAGGTCTACTAAGCTGGAGGAAATCAATTCAAGAAATCAGTACCGGCAACCGGCGGCGTGGGAGGCCGGTGAGCAAAGCATGCATTATGGTACACAGAATGCTCACTCTCAAGGCTTCTTCCAGCCTCTGGAATGCAATCCCACATTGCAAATAGGGCCTGATTATAGGTACAACCCTGTAGCTTCAGAACAGATGACAGCAACAACTCAAGCTCAACAAGTGAATGGGTTTATTCCTGGATGGATGCTTTGA 666 0.4444 MGRGRVELKRIENKINRQVTFAKRRNGLLKKAYELSVLCDAEVALIIFSNRGKLYEFCSTNSMLKTLERYQNCSYGAVEVNKPAKELENSYREYLKLKARFESLQRTQRNLLGEDLGPLGTKELEQLERQLDTSLRQVRSTKLEEINSRNQYRQPAAWEAGEQSMHYGTQNAHSQGFFQPLECNPTLQIGPDYRYNPVASEQMTATTQAQQVNGFIPGWML 221
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc181258g00006 221 CDD MADS_MEF2_like 2 76 IPR033896 GO:0000977|GO:0045944
Stsc181258g00006 221 ProSitePatterns MADS-box domain signature. 3 57 IPR002100 GO:0003677|GO:0046983
Stsc181258g00006 221 ProSiteProfiles MADS-box domain profile. 1 61 IPR002100 GO:0003677|GO:0046983
Stsc181258g00006 221 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 10 57 IPR002100 GO:0003677|GO:0046983
Stsc181258g00006 221 Coils Coil 124 144 - -
Stsc181258g00006 221 FunFam MADS-box transcription factor 1 13 88 - -
Stsc181258g00006 221 Pfam K-box region 85 146 IPR002487 GO:0003700|GO:0005634|GO:0006355
Stsc181258g00006 221 ProSiteProfiles K-box domain profile. 87 166 IPR002487 GO:0003700|GO:0005634|GO:0006355
Stsc181258g00006 221 Coils Coil 84 107 - -
Stsc181258g00006 221 SUPERFAMILY SRF-like 2 79 IPR036879 GO:0003677|GO:0046983
Stsc181258g00006 221 PANTHER SERUM RESPONSE FACTOR HOMOLOG 3 167 - -
Stsc181258g00006 221 Gene3D - 13 85 IPR036879 GO:0003677|GO:0046983
Stsc181258g00006 221 PRINTS MADS domain signature 23 38 IPR002100 GO:0003677|GO:0046983
Stsc181258g00006 221 PRINTS MADS domain signature 38 59 IPR002100 GO:0003677|GO:0046983
Stsc181258g00006 221 PRINTS MADS domain signature 3 23 IPR002100 GO:0003677|GO:0046983
Stsc181258g00006 221 SMART madsneu2 1 60 IPR002100 GO:0003677|GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc181258g00006 Stsc-Chr181258 47710 54135 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc181258g00006 1 221 MADS-box Gene Family AT5G15800 64.504 6.31e-102 294
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-MIKC Stsc181258g00006 K-box 4.7e-19 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc181258g00006 K09264 - gmx:100785322 387.882