Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc181258g00003 ATGGGAAGAGGGAAGGTGGAGTTGAAGCAGATCGAGAACAAGATCAATCGGCAAGTAACGTTCTCGAAACGGAGAACGGGGCTGAGGAAGAAAGCGCATGAAATCTCGGTTCTCTGCGATGCTCAAGTTGCATTGATCGTCTTCAACACCAGAGGCAAACTATTCGATTTCTCATCTGATTCCAGTGTGGAAAACATCCTTGAACGATATGAGAGACATGTCAATGCATTGAAATTTAATGGAGGTGAAAATGGATCACAGGAAAACTATTCATTGGAATATTTCAAGCTCAAGAGCAAAGCTGAAGTCTTAGAGAGAAATACAAGGAACTTGGCGGGAAATGATCTTGATCCATTGAGCCTGAGAGAGCTTCAGAATTTAGAGAATCAGCTTGAAGCATCTTTAAAGCGTATCAGAGCAAGAAAGAACAATACTATGAACGAATCCATCTCGGAGCTGCATAAAAAGACAAAGTCGTTGCAGGAACACAACAACAGCCTAACAAAAGAGATCAAAGAGAAGGAGAAGGAGAAGGAGAAGGAGAAGATAATGGTTGAAGGTGCAGAGTGCTGGGTAGAACAAACCCTTAAGCAATCTCCCAAAAGATCAGGTCCTGCTTTAACACTCGGATGTATGTAG 639 0.4241 MGRGKVELKQIENKINRQVTFSKRRTGLRKKAHEISVLCDAQVALIVFNTRGKLFDFSSDSSVENILERYERHVNALKFNGGENGSQENYSLEYFKLKSKAEVLERNTRNLAGNDLDPLSLRELQNLENQLEASLKRIRARKNNTMNESISELHKKTKSLQEHNNSLTKEIKEKEKEKEKEKIMVEGAECWVEQTLKQSPKRSGPALTLGCM 212
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc181258g00003 212 ProSitePatterns MADS-box domain signature. 3 57 IPR002100 GO:0003677|GO:0046983
Stsc181258g00003 212 CDD MADS_MEF2_like 2 73 IPR033896 GO:0000977|GO:0045944
Stsc181258g00003 212 ProSiteProfiles K-box domain profile. 87 177 IPR002487 GO:0003700|GO:0005634|GO:0006355
Stsc181258g00003 212 SUPERFAMILY SRF-like 2 75 IPR036879 GO:0003677|GO:0046983
Stsc181258g00003 212 Coils Coil 150 184 - -
Stsc181258g00003 212 MobiDBLite consensus disorder prediction 160 179 - -
Stsc181258g00003 212 FunFam MADS-box transcription factor MADS-MC 13 85 - -
Stsc181258g00003 212 SMART madsneu2 1 60 IPR002100 GO:0003677|GO:0046983
Stsc181258g00003 212 Pfam K-box region 86 171 IPR002487 GO:0003700|GO:0005634|GO:0006355
Stsc181258g00003 212 PRINTS MADS domain signature 3 23 IPR002100 GO:0003677|GO:0046983
Stsc181258g00003 212 PRINTS MADS domain signature 38 59 IPR002100 GO:0003677|GO:0046983
Stsc181258g00003 212 PRINTS MADS domain signature 23 38 IPR002100 GO:0003677|GO:0046983
Stsc181258g00003 212 ProSiteProfiles MADS-box domain profile. 1 61 IPR002100 GO:0003677|GO:0046983
Stsc181258g00003 212 PANTHER SERUM RESPONSE FACTOR HOMOLOG 3 165 - -
Stsc181258g00003 212 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 11 57 IPR002100 GO:0003677|GO:0046983
Stsc181258g00003 212 Coils Coil 121 148 - -
Stsc181258g00003 212 Gene3D - 13 80 IPR036879 GO:0003677|GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc181258g00003 Stsc-Chr181258 14881 27776 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc181258g00003 1 175 MADS-box Gene Family AT1G26310 61.236 1.08e-70 214
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-MIKC Stsc181258g00003 K-box 9.1e-26 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc181258g00003 K09264 - gmx:100820188 229.565