Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Stsc181258g00002 | ATGGGTTCTGTTTGTTGCTGTCTGAGATTTGATGATTTTGAAGATTATGTAAATCCAAATAGTTCTGTGTATAGGAACTGTGTCTGTCTCAGTTGCTTGATACAGAATCTTTTGAATGTGTATGCATCAATATTCCGCAGAGGGGAAGTGCATTCGGCTCCTTCATCCTTGCAGGGGGCTGCATCCATGACCTCTGCAGCATCACTTGATAATTCTCTGTCTGACATGTACCGTTCTCCTCCAAGGCCATTACCGTATGATGCAGAACAAAGGTTTTTTCGCGCACGTGATGGGTTAGTTTCAAGGCGTGAGAAGGGCTCAAGTCATTCAAATGAGGAAACAGAACCTTTAAGAAGTAATGTAGACGATACAGAATCTTTAAATTCAGGAGACAAATGGAATGAACGTGCCTGTGATGATGGATCAAAGGAATACCGTTCTAAGTCCTCACTAAAAGTTTCATCAGCAAAATATACAACTGGAGTTGGGCTTGTTTATGCATCATCAGAAGAGGAGGATGTCTGTCCGACTTGCCTTGAAGAATACACTACCGAGAATCCGAAGATAATGACAAAATGCTCTCACCATTTTCATCTGGGTTGCATTTATGAGTGGATGGAGAGAAGTGACAACTGTCCAGTTTGTGGAAAGGTGATGGTATTCGATGAAACGGCATACTCTTGA | 684 | 0.4196 | MGSVCCCLRFDDFEDYVNPNSSVYRNCVCLSCLIQNLLNVYASIFRRGEVHSAPSSLQGAASMTSAASLDNSLSDMYRSPPRPLPYDAEQRFFRARDGLVSRREKGSSHSNEETEPLRSNVDDTESLNSGDKWNERACDDGSKEYRSKSSLKVSSAKYTTGVGLVYASSEEEDVCPTCLEEYTTENPKIMTKCSHHFHLGCIYEWMERSDNCPVCGKVMVFDETAYS | 227 |
Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Stsc181258g00002 | 227 | CDD | RING-H2_AIRP1-like | 171 | 219 | - | - | |
Stsc181258g00002 | 227 | Gene3D | Zinc/RING finger domain, C3HC4 (zinc finger) | 151 | 222 | IPR013083 | - | |
Stsc181258g00002 | 227 | MobiDBLite | consensus disorder prediction | 101 | 120 | - | - | |
Stsc181258g00002 | 227 | MobiDBLite | consensus disorder prediction | 101 | 141 | - | - | |
Stsc181258g00002 | 227 | SUPERFAMILY | RING/U-box | 170 | 222 | - | - | |
Stsc181258g00002 | 227 | PANTHER | ZINC FINGER, RING/FYVE/PHD-TYPE | 60 | 223 | - | - | |
Stsc181258g00002 | 227 | Pfam | RING-H2 zinc finger domain | 170 | 215 | IPR024766 | GO:0008270 | |
Stsc181258g00002 | 227 | SMART | ring_2 | 175 | 215 | IPR001841 | - | |
Stsc181258g00002 | 227 | ProSiteProfiles | Zinc finger RING-type profile. | 175 | 215 | IPR001841 | - | |
Stsc181258g00002 | 227 | FunFam | E3 ubiquitin-protein ligase At3g02290-like | 152 | 222 | - | - |
Select | Gene | Chromosome | Start | End | Duplicated_type |
---|---|---|---|---|---|
Stsc181258g00002 | Stsc-Chr181258 | 7713 | 11980 | Dispersed |
Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
---|---|---|---|---|---|---|---|---|
Stsc181258g00002 | 1 | 224 | C3H Transcription Factor Family | AT5G15790 | 59.914 | 1.13e-89 | 262 |
Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Stsc181258g00002 | - | - | gmx:100777068 | 419.083 |