Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc181257g00045 ATGGGGAAGGAGAAGAGCCACATCAATATCGTCGTTATCGGCCATGTCGACTCCGGCAAGTCGACCACCACTGGCCACCTCATCTACAAGCTTGGAGGGATCGACAAGCGTGTGATCGAGAGGTTCGAGAAGGAGGCTGCTGAGATGAACAAGCGTTCATTCAAGTATGCTTGGGTTCTCGACAAGCTCAAGGCAGAGCGTGAGCGTGGTATCACCATTGACATCGCTCTCTGGAAGTTTGAGACCACCAAGTACTACTGCACTGTGATTGATGCACCTGGTCACCGTGATTTCATCAAGAACATGATCACTGGTACCAGCCAAGCTGACTGTGCTGATGGCCAGACCCGTGAGCATGCTCTGCTTGCCTTCACCCTTGGTGTTAGGCAGATGATCTGCTGTTGCAACAAGATGGATGCAACCACCCCGAAATACTCCAAGGCTAGGTATGATGAGATTGTGAAGGAGGTTTCATCCTATTTGAAGAAGGTCGGTTACAACCCTGATAAGATCCCATTTGTCCCAATTTCTGGTTTTGAGGGAGACAACATGATTGAGAGGTCCACCAACCTTGATTGGTACAAGGGACCCACCCTGCTTGAGGCTCTGGACCAGGTCACTGAGCCAAAGAGACCCTCTGATAAGCCTCTCAGGTTGCCACTTCAGGACGTCTACAAGATTGGTGGTATTGGAACTGTTCCTGTAGGTCGTGTCGAGACTGGTGTCCTCAAGCCTGGTATGGTGGTGACCTTTGGCCCCACTGGACTCCAGACTGAGGTTAAGTCTGTGGAGATGCACCATGAGTCGCTCCCCGAGGCTCTCCCCGGTGACAATGTTGGGTTCAACGTGAAGAATGTCTCTGTGAAGGAGTTGAAGCGTGGCTTTGTTGCTTCTAACTCAAAGGATGACCCTGCAAAGGAGGCTGCAAGCTTCACCTCTCAGGTCATCATCATGAACCATCCTGGCCAGATTGGCCAAGGTTATGCTCCAGTCCTTGACTGCCACACCTCACACATTGCTGTCAAGTTTGCTGAGCTCCAGACCAAGATTGATAGGCGTTCTGGAAAAGAGCTTGAAAAGGAGCCCAAGTTTCTCAAGAATGGTGATGCTGGTATGGTGAAGATGATTCCTACAAAGCCAATGGTTGTTGAGACTTTTGCTGAGTACCCCCCACTTGGAAGGTTTGCTGTGAGGGACATGCGTCAAACTGTGGCCGTTGGTGTCATCAAGAGCGTTGAGAAGAAGGATGCTACTGGCAAGGTCACTAAAGCTGCTGCAAAGAAAACTGGGAAATGA 1296 0.5046 MGKEKSHINIVVIGHVDSGKSTTTGHLIYKLGGIDKRVIERFEKEAAEMNKRSFKYAWVLDKLKAERERGITIDIALWKFETTKYYCTVIDAPGHRDFIKNMITGTSQADCADGQTREHALLAFTLGVRQMICCCNKMDATTPKYSKARYDEIVKEVSSYLKKVGYNPDKIPFVPISGFEGDNMIERSTNLDWYKGPTLLEALDQVTEPKRPSDKPLRLPLQDVYKIGGIGTVPVGRVETGVLKPGMVVTFGPTGLQTEVKSVEMHHESLPEALPGDNVGFNVKNVSVKELKRGFVASNSKDDPAKEAASFTSQVIIMNHPGQIGQGYAPVLDCHTSHIAVKFAELQTKIDRRSGKELEKEPKFLKNGDAGMVKMIPTKPMVVETFAEYPPLGRFAVRDMRQTVAVGVIKSVEKKDATGKVTKAAAKKTGK 431
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc181257g00045 431 SUPERFAMILY EF-Tu/eEF-1alpha/eIF2-gamma C-terminal domain 309 412 IPR009001 -
Stsc181257g00045 431 CDD EF1_alpha_II 213 303 - -
Stsc181257g00045 431 FunFam Elongation factor 1-alpha 212 299 - -
Stsc181257g00045 431 Gene3D - 1 211 IPR027417 -
Stsc181257g00045 431 Pfam Elongation factor Tu C-terminal domain 304 412 IPR004160 -
Stsc181257g00045 431 Pfam Elongation factor Tu domain 2 231 296 IPR004161 GO:0005525
Stsc181257g00045 431 Gene3D Translation factors 212 299 - -
Stsc181257g00045 431 FunFam Elongation factor 1-alpha 1 209 - -
Stsc181257g00045 431 Gene3D Translation factors 306 413 - -
Stsc181257g00045 431 NCBIfam translation elongation factor EF-1 subunit alpha 1 416 IPR004539 GO:0003746|GO:0005525|GO:0006414
Stsc181257g00045 431 SUPERFAMILY Translation proteins 214 304 IPR009000 -
Stsc181257g00045 431 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 3 232 IPR027417 -
Stsc181257g00045 431 PANTHER TRANSLATION FACTOR 4 416 - -
Stsc181257g00045 431 CDD EF1_alpha 9 210 - -
Stsc181257g00045 431 ProSiteProfiles Translational (tr)-type guanine nucleotide-binding (G) domain profile. 5 213 IPR000795 GO:0003924|GO:0005525
Stsc181257g00045 431 Pfam Elongation factor Tu GTP binding domain 5 207 IPR000795 GO:0003924|GO:0005525
Stsc181257g00045 431 ProSitePatterns Translational (tr)-type guanine nucleotide-binding (G) domain signature. 61 76 IPR031157 -
Stsc181257g00045 431 CDD EF1_alpha_III 306 409 - -
Stsc181257g00045 431 PRINTS GTP-binding elongation factor signature 68 76 IPR000795 GO:0003924|GO:0005525
Stsc181257g00045 431 PRINTS GTP-binding elongation factor signature 88 98 IPR000795 GO:0003924|GO:0005525
Stsc181257g00045 431 PRINTS GTP-binding elongation factor signature 9 22 IPR000795 GO:0003924|GO:0005525
Stsc181257g00045 431 PRINTS GTP-binding elongation factor signature 104 115 IPR000795 GO:0003924|GO:0005525
Stsc181257g00045 431 FunFam Elongation factor 1-alpha 306 413 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc181257g00045 Stsc-Chr181257 276263 277691 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc181257g00045 1 422 Eukaryotic Initiation Factors Gene Family AT5G60390 90.455 0.0 818
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc181257g00045 K03231 - apan:127239482 801.971