Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc181257g00041 ATGGAGGGAAGTGACACAAATACCCCTGTTTCTTGCTCTCAGTCTCCAACATCCTCATGTTCTCTTCCACCACCACCACCACCTCCGCCACAAGTGGTAATGAGCCCTTGCGCTGCTTGCAAGATTCTGCGGCGGAGGTGTGCGGAGAAATGTGTGTTGGCCCCTTACTTCCCTCCAACTGAACCTGCCAAGTTCACCACCGCTCACAGAGTCTTTGGAGCCAGCAACATCATCAAGTTCTTGCAGGAACTTCCGGAGACTCAAAGAGCCGATGCAGTAACAAGCATGGTTTACGAAGCAGGTGCAAGGATAAGAGATCCGGTTTACGGTTGCGCCGGCGCCATTTGCCAGCTTCAGACGCAGGTGAATGAGCTTCAAGCTCAGCTAGCCAAAGCCCAAGCTGAGCTTGTCAACATGCAGCTCCAACAGGCCAATATGGTGGCTCTTCTTTACATGCAAATGGCGGAGACTAAGACTACTACCACCACACAGCAACCATCACCACCGCCGTCGCCGCAACAATCAGTGGACAACTTCATTGCAAGCCCTCCTCACACCAACTCTTATCATATGAATTACAATAATCTCAATTTCTTTGACGACAACAACACTAGCCTAATCAACTCAATGTTTGAGCCTCTTTGGACATGA 651 0.5023 MEGSDTNTPVSCSQSPTSSCSLPPPPPPPPQVVMSPCAACKILRRRCAEKCVLAPYFPPTEPAKFTTAHRVFGASNIIKFLQELPETQRADAVTSMVYEAGARIRDPVYGCAGAICQLQTQVNELQAQLAKAQAELVNMQLQQANMVALLYMQMAETKTTTTTQQPSPPPSPQQSVDNFIASPPHTNSYHMNYNNLNFFDDNNTSLINSMFEPLWT 216
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc181257g00041 216 ProSiteProfiles LOB domain profile. 35 136 IPR004883 -
Stsc181257g00041 216 Pfam Lateral organ boundaries (LOB) domain 36 133 IPR004883 -
Stsc181257g00041 216 MobiDBLite consensus disorder prediction 1 27 - -
Stsc181257g00041 216 MobiDBLite consensus disorder prediction 158 180 - -
Stsc181257g00041 216 PANTHER LOB DOMAIN-CONTAINING PROTEIN 4-RELATED 35 166 - -
Stsc181257g00041 216 MobiDBLite consensus disorder prediction 1 18 - -
Stsc181257g00041 216 Coils Coil 115 142 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc181257g00041 Stsc-Chr181257 256372 258000 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc181257g00041 32 216 AS2 family AT2G28500 63.830 1.80e-80 238
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF LOB Stsc181257g00041 LOB 6.8e-41 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc181257g00041 - - gmx:100819336 269.626