Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc181257g00037 ATGGATCCTTCTAGTGCACAACACCACCAGGAAATGTCATCAAACCAGACACTGGAGAACATGATAGGAGGATGTTCATCAACAAAGCAACATCAAGTAGTAGAGAGGAAGCCAAGGCCACAGCCAGAACAAGCACTCAAATGTCCAAGATGTGACTCTACCAACACCAAATTCTGCTACTACAACAACTACAGCCTCTCTCAGCCAAGGTACTTCTGCAAATCTTGCAGAAGATACTGGACCAAAGGAGGAACACTCAGGAATGTTCCTGTTGGTGGTGGCTGCAGGAAGAACAAGAGATCTTCTAACTCTTCTTCTTCTTCAGCAACTTCATCTTCATCTAATTCACCTGCACATGCACCCTCTTCTTCAAGGAGGCCTCATCATCAAGATCATCATCCTTTCATCACATCACCTAATAATCCACTCATCTCTGCTTTCCCTCATCTGGCTTATGATTCTTCCCCCAGTGACCTCACCTTAGCACTTGCAAGGCTCCACAAGCAAACAATGCCTTTTGATGATCATGATCTCTCAATCTTGGGTAACCCCACAAGCTCCCTTTGTGATATTCTTGGAAATCAAGGCCTTAATAACACTACCCACACCAACAATGGTTTCTTGGAAGCACTTAGAACCGGATTCCAAGCAAACAATAATAACAGTAACAGTGCTCTTCATCAGAATCATCTCTACTATTCATATGGGAATGGAGACATGGGTGAGGTTGTGGACAATGGTGCTGTTCATGGTGGAGACATGTTGCTACCTAATAATAATAATCATAACAACAACTATGATTCAGAGATGAGCAATGCAGCAACAACTCAAGCAATGAGTGTCAGCACCATGAAGCAAGAGCTTTGCAGTGAAGCTACTAATAAGGTTCTCGGTGGTGGTGGCTTTCCATGGCATCACCTCAACAATAATCATAGTAATGGGGACACAAACATGATGGGTGAACTTGATTCAGCTAGAACAACTTGGAATGGTTTCACATCTTCAAATTGGCATGGTGGCCTTCTCCATAGTCCTCTAATGTAA 1044 0.433 MDPSSAQHHQEMSSNQTLENMIGGCSSTKQHQVVERKPRPQPEQALKCPRCDSTNTKFCYYNNYSLSQPRYFCKSCRRYWTKGGTLRNVPVGGGCRKNKRSSNSSSSSATSSSSNSPAHAPSSSRRPHHQDHHPFITSPNNPLISAFPHLAYDSSPSDLTLALARLHKQTMPFDDHDLSILGNPTSSLCDILGNQGLNNTTHTNNGFLEALRTGFQANNNNSNSALHQNHLYYSYGNGDMGEVVDNGAVHGGDMLLPNNNNHNNNYDSEMSNAATTQAMSVSTMKQELCSEATNKVLGGGGFPWHHLNNNHSNGDTNMMGELDSARTTWNGFTSSNWHGGLLHSPLM 347
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc181257g00037 347 MobiDBLite consensus disorder prediction 97 123 - -
Stsc181257g00037 347 MobiDBLite consensus disorder prediction 1 31 - -
Stsc181257g00037 347 MobiDBLite consensus disorder prediction 1 47 - -
Stsc181257g00037 347 MobiDBLite consensus disorder prediction 90 139 - -
Stsc181257g00037 347 PANTHER DOF ZINC FINGER PROTEIN DOF1.4-RELATED 19 259 IPR045174 GO:0003700|GO:0006355
Stsc181257g00037 347 Pfam Dof domain, zinc finger 44 100 IPR003851 GO:0003677|GO:0006355
Stsc181257g00037 347 ProSitePatterns Zinc finger Dof-type signature. 48 84 IPR003851 GO:0003677|GO:0006355
Stsc181257g00037 347 ProSiteProfiles Zinc finger Dof-type profile. 46 100 IPR003851 GO:0003677|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc181257g00037 Stsc-Chr181257 229808 231514 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc181257g00037 1 347 C2C2-Dof Transcription Factor Family AT2G28510 36.675 4.91e-43 149
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-Dof Stsc181257g00037 zf-Dof 7.7e-34 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc181257g00037 - - aip:107612899 508.064