Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc181257g00033 ATGTTTCTCGATAAAATGGAGAAGTTCATCGACAACTTGACGCCGATGGATCTGATGCGATCGGAGAAGATGACCTTCGTCCAGCTCATCATCCCCGCCGAGTCCGCTCACCGAGCCATCTCCTACCTCGGCGAACTCGGCCTCCTCCAATTCCGCGACTTAAATGCTGATAAAAGCCCATTCCAGAGAACGTTTGTTAATCAGGTAAAGCGATGTGCCGAAATGTCACGGAAGCTACGATTCTTCAAGGATCAAATCAATAAAGCTGGCATAATGTCTTCTTCTCATACTGTATTGCAACCAGACATTGACTTGGAGGATTTAGAGATACAACTTGCTGACCATGAACATGAGCTAATTGAAATGAATTCCAACAGTGACAAACTTCGGCAATCATATAATGAACTCCTAGAGTTCAAGATTGTATTGCAGAAGGCATGTGGTTTTCTTGTTTCAAGTCATGGCCGTGCTATTCCCGACGAGAGGGAACTACAAGAGAATGTGTACTCAAATGATGGCTTTGTTGAAACAGCATCTTTGCTTGAACAGGAAATAAGGCCTGGACCATCAAATCCATCTGGTTTAAGATTTATCAGTGGAATAATTTGTAAATCCAAGCTACTTCGGTTTGAAAGGATGTTGTTTCGTGCTACAAGAGGCAATATGCTTTTCAATCAGGCACCAGCTGATGAGCAAATCATGGATCCTGTTTCAGCTGAAATGATTGAGAAAACAGTGTTCGTTGTGTTTTTCTCTGGGGAGCAGGCTAGAACTAAGATTCTGAAAATTTGTGAGGCATTTGGCGCTAATTGTTATCCTGTTCCTGAAGATATAAGCAAGCAGAGACAAATAACAAGAGAGGTTTCATCACGCCTTACTGACTTAGAGGCAACTTTGGATGCTGGGTTGAGGCACCGCAATAAGGCTCTAGCTTCTGTAGGGGAACATCTATCAGACTGGATGAACATGGTAAGAAGAGAGAAGGCCGTGTATGATACACTGAACATGTTAAATTTTGATGTCACAAAGAAGTGTCTTGTTGGAGAGGGATGGTGCCCTATAATTGCAAAAACACAGATTCAGGAGGCATTGCAACGTGCAACTTTTGATAGCAGTTCTCAAGTAGGCATAATCTGCCATCCAATGGATGCAGTGGAATCACCACCTACATATTTTAGGACCAACAGTTTCACTAGTCCGTATCAGGAAATTGTTGATGCATATGGTGTTGCAAGATACCAAGAAGCAAATCCAGCTGTTTACACAACTATTATATTTCCCTTTCTATTTGCTGTGATGTTTGGGGATTGGGGTCATGGAATTTGCCTGTTGCTGGGAGCATTGATTCTTATAGCACGTGAAAGCAAGCTCAGCACACAGAAACTTGGAAGTTTTATGGAGATGCTATTTGGTGGACGCTATGTACTTCTTTTGATGTCACTATTCTCAATTTATTGTGGATTAATCTACAATGAATTCTTTTCTGTTCCGTTTCACATATTTGGCGAGTCAGCTTACAGATGCCGAGATAATACATGCAGGGATGCACATACTATTGGCTTAGTCAAAGTCCGAGATCCATATCCATTTGGTGTGGATCCCAAGTGGCGTGGAAGTCGATCAGAATTGGCTTTTCTGAACTCTATGAAGATGAAGATGTCCATTCTGCTTGGTGTGGTGCATATGAACTTGGGAATTATATTAAGTTATTTTAATGCTCGTTTCTTTGGAAACACACTGGATATAAGGTACCAGTTTGTGCCGCAGATGATTTTCCTAAATAGTTTATTTGGGTATCTCTCCCTCCTCATTGTTGTTAAGTGGTGTACTGGTTCTCAGGCGGACCTTTATCATGTAATGATATACATGTTTTTGAGCCCCACAGATAATCTTGGTGAAAATCAGCTGTTCTGGGGTCAAAGGCCACTTCAGATTGTATTATTGCTCTTGGCACTAATTGCGGCTCCATGGATGCTCTTTCCAAAACCCTTTATACTAAAGAAGCTTCATACTGAGAGATTTCAAGGTCGTGCTTATGGTATTCTTAATACCTCTGAGATGGATCTTGAGGAGCCAGATTCTGCCAGGCAACATCATCATGAAGAATTCAACTTCAGTGAGGTTTTTGTTCACCAAATGATCCACGCCATTGAGTTTATTCTAGGTTCAGTTTCAAATACAGCTTCGTATCTTCGACTTTGGGCACTAAGCTTGGCCCACTCCGAACTTTCTACTGTCTTCTATGAGAAAGTCCTGCTTCTAGCTTGGGGGTATGACAATCTTATCATTCGGTTACTGGGGCTAGCGGTGTTTGCCTTTGCAACTGCCTTTATACTGCTTATGATGGAGACTCTTAGTGCTTTTCTTCATGCCCTACGGCTTCACTGGGTCGAATTTCAAAACAAATTCTACCATGGTGATGGCTACAAATTCAAGCCTTTTTCCTTTGCAACCTTAACAGATGATGATGAATGA 2475 0.4182 MFLDKMEKFIDNLTPMDLMRSEKMTFVQLIIPAESAHRAISYLGELGLLQFRDLNADKSPFQRTFVNQVKRCAEMSRKLRFFKDQINKAGIMSSSHTVLQPDIDLEDLEIQLADHEHELIEMNSNSDKLRQSYNELLEFKIVLQKACGFLVSSHGRAIPDERELQENVYSNDGFVETASLLEQEIRPGPSNPSGLRFISGIICKSKLLRFERMLFRATRGNMLFNQAPADEQIMDPVSAEMIEKTVFVVFFSGEQARTKILKICEAFGANCYPVPEDISKQRQITREVSSRLTDLEATLDAGLRHRNKALASVGEHLSDWMNMVRREKAVYDTLNMLNFDVTKKCLVGEGWCPIIAKTQIQEALQRATFDSSSQVGIICHPMDAVESPPTYFRTNSFTSPYQEIVDAYGVARYQEANPAVYTTIIFPFLFAVMFGDWGHGICLLLGALILIARESKLSTQKLGSFMEMLFGGRYVLLLMSLFSIYCGLIYNEFFSVPFHIFGESAYRCRDNTCRDAHTIGLVKVRDPYPFGVDPKWRGSRSELAFLNSMKMKMSILLGVVHMNLGIILSYFNARFFGNTLDIRYQFVPQMIFLNSLFGYLSLLIVVKWCTGSQADLYHVMIYMFLSPTDNLGENQLFWGQRPLQIVLLLLALIAAPWMLFPKPFILKKLHTERFQGRAYGILNTSEMDLEEPDSARQHHHEEFNFSEVFVHQMIHAIEFILGSVSNTASYLRLWALSLAHSELSTVFYEKVLLLAWGYDNLIIRLLGLAVFAFATAFILLMMETLSAFLHALRLHWVEFQNKFYHGDGYKFKPFSFATLTDDDE 824
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc181257g00033 824 Coils Coil 105 132 - -
Stsc181257g00033 824 PIRSF ATP6V0A1 14 824 IPR026028 GO:0000220|GO:0046961
Stsc181257g00033 824 PANTHER VACUOLAR PROTON ATPASES 18 822 IPR002490 GO:0033179|GO:0046961|GO:1902600
Stsc181257g00033 824 Pfam V-type ATPase 116kDa subunit family 42 816 IPR002490 GO:0033179|GO:0046961|GO:1902600
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc181257g00033 Stsc-Chr181257 200702 208653 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc181257g00033 6 817 Primary Pumps ATPases(2) AT2G28520 81.227 0.0 1368
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc181257g00033 K02154 - gmx:100776037 1496.87