Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc181257g00023 ATGTTCGATCTTAACCTGAATGCCGATTCCACTCAGCACGATGACTCGCCCGTGCTCCTCAGGGAGAAGATTCCGGAAGCGTCCTCCGGGACCTCGAATTCCTCCGTGGTGAATGCGGAGGGCTCGAGCAACGGAGGTGGCGGTGGAGACGATGACTCGTGTTCCACACGCGCCACTGGCAGCGGCGACTTCTACACCTTCAATTTCGATATTCTGAAGGTGGAAGGCGGGACTGAAAACGTCGTCGCGACGAAGGAGCTGTTTCCCGTGAGTGCCGGGAACTGGCAGGGGCAGCCTTCCACGTCGTCGATTCCGGCGAGGAAGAGCTGGATGGATCTGTCTCTGGATCAGCATCGAGCTGAAAGCGCCGAGATGAAGAATATTGTCCATGTTCAGCAGCAGCAGCAGCAGCAACAGCAACAGCAACAACAGCCTCCGCAAGCGAAGAAGAGTAGGAGAGGCCCACGGTCAAGGAGCTCGCAGTACAGAGGTGTCACCTTCTACAGGAGGACCGGAAGATGGGAATCGCATATCTGGGATTGCGGGAAACAAGTTTATCTAGGTGGATTTGACACCGCTCATGCCGCTGCTAGAGCTTATGATCGAGCTGCGATCAAGTTTAGGGGACTTGATGCTGACATCAATTTTAATCTCGTTGACTATGAGGACGATCTCAAACAGATGAAAAATCTCTCCAAGGAGGAATTTGTTCACATACTCCGTCGCCAAAGCACTGGTTTCTCAAGGGGAAGTTCAAAATACCGAGGAGTGACACTTCACAAATGTGGCCGGTGGGAAGCTCGAATGGGACAATTCCTTGGCAAAAAGTATATATATCTTGGGCTATTCGACAGCGAAGTAGAAGCTGCAAGGTCTTAG 879 0.5245 MFDLNLNADSTQHDDSPVLLREKIPEASSGTSNSSVVNAEGSSNGGGGGDDDSCSTRATGSGDFYTFNFDILKVEGGTENVVATKELFPVSAGNWQGQPSTSSIPARKSWMDLSLDQHRAESAEMKNIVHVQQQQQQQQQQQQQPPQAKKSRRGPRSRSSQYRGVTFYRRTGRWESHIWDCGKQVYLGGFDTAHAAARAYDRAAIKFRGLDADINFNLVDYEDDLKQMKNLSKEEFVHILRRQSTGFSRGSSKYRGVTLHKCGRWEARMGQFLGKKYIYLGLFDSEVEAARS 292
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc181257g00023 292 FunFam AP2-like ethylene-responsive transcription factor 160 219 - -
Stsc181257g00023 292 MobiDBLite consensus disorder prediction 26 55 - -
Stsc181257g00023 292 SMART rav1_2 253 292 IPR001471 GO:0003700|GO:0006355
Stsc181257g00023 292 SMART rav1_2 161 223 IPR001471 GO:0003700|GO:0006355
Stsc181257g00023 292 Gene3D AP2/ERF domain 160 219 IPR036955 GO:0003700|GO:0006355
Stsc181257g00023 292 Gene3D AP2/ERF domain 252 292 IPR036955 GO:0003700|GO:0006355
Stsc181257g00023 292 MobiDBLite consensus disorder prediction 127 162 - -
Stsc181257g00023 292 SUPERFAMILY DNA-binding domain 160 217 IPR016177 GO:0003677
Stsc181257g00023 292 Pfam AP2 domain 161 209 IPR001471 GO:0003700|GO:0006355
Stsc181257g00023 292 Pfam AP2 domain 252 291 IPR001471 GO:0003700|GO:0006355
Stsc181257g00023 292 SUPERFAMILY DNA-binding domain 252 291 IPR016177 GO:0003677
Stsc181257g00023 292 CDD AP2 252 292 IPR001471 GO:0003700|GO:0006355
Stsc181257g00023 292 MobiDBLite consensus disorder prediction 127 150 - -
Stsc181257g00023 292 CDD AP2 161 216 IPR001471 GO:0003700|GO:0006355
Stsc181257g00023 292 PANTHER AP2-LIKE ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR 110 291 - -
Stsc181257g00023 292 MobiDBLite consensus disorder prediction 1 55 - -
Stsc181257g00023 292 ProSiteProfiles AP2/ERF domain profile. 253 292 IPR001471 GO:0003700|GO:0006355
Stsc181257g00023 292 ProSiteProfiles AP2/ERF domain profile. 161 217 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc181257g00023 Stsc-Chr181257 157501 159754 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc181257g00023 1 276 AP2-EREBP Transcription Factor Family AT2G28550 62.245 1.46e-90 268
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-AP2 Stsc181257g00023 AP2 1.2e-10 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc181257g00023 K09284 - gmx:100777102 379.793