Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc181257g00022 ATGTTCGATCTTAACCTGAATGCCGATTCCACTCAGCACGATGACTCGCCCGTGCTCCTCAGGGAGAAGATTCCGGAAGCGTCCTCCGGGACCTCGAATTCCTCCGTGGTGAATGCGGAGGGCTCGAGCAACGGAGGTGGCGGTGGAGACGATGACTCGTGTTCCACACGCGCCACTGGCAGCGGCGACTTCTACACCTTCAATTTCGATATTCTGAAGGTGGAAGGCGGGACTGAAAACGTCGTCGCGACGAAGGAGCTGTTTCCCGTGAGTGCCGGGAACTGGCAGGGGCAGCCTTCCACGTCGTCGATTCCGGCGAGGAAGAGCTGGATGGATCTGTCTCTGGATCAGCATCGAGCTGAAAGCGCCGAGATGAAGAATATTGTCCATGTTCAGCAGCAGCAGCAGCAGCAACAGCAACAGCAACAACAGCCTCCGCAAGCGAAGAAGAGTAGGAGAGGCCCACGGTCAAGGAGCTCGCAGTACAGAGGTGTCACCTTCTACAGGAGGACCGGAAGATGGGAATCGCATATCTGGGATTGCGGGAAACAAGTTTATCTAGGTGGATTTGACACCGCTCATGCCGCTGCTAGAGCTTATGATCGAGCTGCGATCAAGTTTAGGGGACTTGATGCTGACATCAATTTTAATCTCGTTGACTATGAGGACGATCTCAAACAGATGAAAAATCTCTCCAAGGAGGAATTTGTTCACATACTCCGTCGCCAAAGCACTGGTTTCTCAAGGGGAAGTTCAAAATACCGAGGAGTGACACTTCACAAATGTGGCCGGTGGGAAGCTCGAATGGGACAATTCCTTGGCAAAAAGTGA 831 0.5307 MFDLNLNADSTQHDDSPVLLREKIPEASSGTSNSSVVNAEGSSNGGGGGDDDSCSTRATGSGDFYTFNFDILKVEGGTENVVATKELFPVSAGNWQGQPSTSSIPARKSWMDLSLDQHRAESAEMKNIVHVQQQQQQQQQQQQQPPQAKKSRRGPRSRSSQYRGVTFYRRTGRWESHIWDCGKQVYLGGFDTAHAAARAYDRAAIKFRGLDADINFNLVDYEDDLKQMKNLSKEEFVHILRRQSTGFSRGSSKYRGVTLHKCGRWEARMGQFLGKK 276
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc181257g00022 276 SMART rav1_2 161 223 IPR001471 GO:0003700|GO:0006355
Stsc181257g00022 276 MobiDBLite consensus disorder prediction 26 55 - -
Stsc181257g00022 276 SUPERFAMILY DNA-binding domain 160 217 IPR016177 GO:0003677
Stsc181257g00022 276 Pfam AP2 domain 161 209 IPR001471 GO:0003700|GO:0006355
Stsc181257g00022 276 MobiDBLite consensus disorder prediction 127 150 - -
Stsc181257g00022 276 PANTHER AP2-LIKE ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR 110 276 - -
Stsc181257g00022 276 MobiDBLite consensus disorder prediction 127 162 - -
Stsc181257g00022 276 FunFam AP2-like ethylene-responsive transcription factor 160 219 - -
Stsc181257g00022 276 CDD AP2 161 216 IPR001471 GO:0003700|GO:0006355
Stsc181257g00022 276 MobiDBLite consensus disorder prediction 1 55 - -
Stsc181257g00022 276 ProSiteProfiles AP2/ERF domain profile. 161 217 IPR001471 GO:0003700|GO:0006355
Stsc181257g00022 276 Gene3D AP2/ERF domain 160 219 IPR036955 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc181257g00022 Stsc-Chr181257 157501 159754 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc181257g00022 1 276 AP2-EREBP Transcription Factor Family AT2G28550 62.245 5.61e-91 269
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Stsc181257g00022 AP2 1.1e-10 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc181257g00022 K09284 - gmx:100777102 350.517