Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc181257g00016 ATGGGTTGCTTGCATTGCATAGGAAAACCAAGCAAAAGATTAGGCAGCGATTACTATAGCAATAGCAATAGCCCCAAACACACCAACAAAAAAATTATTAATGCCTCCGAGGATAAGAACAAGGCCAGAGTTGAATTGAATGGGAGAGCGAATGGTGGTAATAAAAGAGAAGGCAATTCCAACAATGATGATAAAAATCAACTTTCTTTGGACGTGAAGAAGTTGAAGTTGAGAGAGGATGATGGCAACACCAGCAACGTCAACAAAGCCATGACCTTTACTTTTGATGAGCTTGCTGCTGCAACAGGGAATTTCAGGCCAGATTGTTTTCTTGGTGAAGGAGGGTTTGGCAAGGTTTACAAGGGCCACTTGGACAGGATAAACCAGGTTGTAGCTATAAAGCAACTTGACCCCCACGGCCTTCAAGGAACTAGGGAATTTGTTATAGAAGTTTTGACATTGAGTATGGTAGATCATCCTAATCTTGTCAAGTCTATTGGGTATTGTGCTGAAGGAGATCAGAGGCTTCTGGTTTATGAATACATGCCATTGGGATCTTTGGAGAACCATTTACATGATCTTCCACCGGGGAAAAGACCTTTAAGTTGGAATACAAGGATGAAAATCGCGGCCGGCGCAGCCAAGGGGTTGGAGTATTTGCATGATAAAATGAAGCCTCCTGTAATTTACCGTGATCTGAAATGCTCAAACATTTTGTTAGACGAGAAATATCATGCCAAATTGTCTGATTTCGGGTTGGCGAAAGTAGTCCCTAGTGGCGATAAGTCTCATGTTTCGACGAGGGTTATGGGCACTTATGGCTACTGTGCTCCAGATTATGCAATGACTGGTCAGTTGACATTCAAGTCTGATATTTACAGCTTCGGTGTTGTTCTTTTGGAGCTTATCACAGGAAGGAAAGTCATCGACCACAGAAGACCCGAAAAGGAAGAAAATCTAGTTGCATGGGCAAGGCCATTATTCAAAGACAGGAAAAGATTCTCAGAGATGGTTGATCCATTGCTTGAAGGTAAATATCCAGTGAGAGGCTTGTACCAAGCACTCGCCATTGCGGCCATGTGTCTACAAGAGCAGCCTAATATGCGGCCTGCCACGGCGGATGTGGTTACAGCTCTAGATTTCCTTGCTTCACAGAAATATGATCCCAATTCTACCACTCCAAACTCAAAAAGTCCATCAGTTTCTCCAACAATTCAGAAAACGGATGACAATTGA 1236 0.4296 MGCLHCIGKPSKRLGSDYYSNSNSPKHTNKKIINASEDKNKARVELNGRANGGNKREGNSNNDDKNQLSLDVKKLKLREDDGNTSNVNKAMTFTFDELAAATGNFRPDCFLGEGGFGKVYKGHLDRINQVVAIKQLDPHGLQGTREFVIEVLTLSMVDHPNLVKSIGYCAEGDQRLLVYEYMPLGSLENHLHDLPPGKRPLSWNTRMKIAAGAAKGLEYLHDKMKPPVIYRDLKCSNILLDEKYHAKLSDFGLAKVVPSGDKSHVSTRVMGTYGYCAPDYAMTGQLTFKSDIYSFGVVLLELITGRKVIDHRRPEKEENLVAWARPLFKDRKRFSEMVDPLLEGKYPVRGLYQALAIAAMCLQEQPNMRPATADVVTALDFLASQKYDPNSTTPNSKSPSVSPTIQKTDDN 411
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc181257g00016 411 MobiDBLite consensus disorder prediction 14 68 - -
Stsc181257g00016 411 SMART serkin_6 105 382 IPR000719 GO:0004672|GO:0005524|GO:0006468
Stsc181257g00016 411 SUPERFAMILY Protein kinase-like (PK-like) 89 395 IPR011009 -
Stsc181257g00016 411 Gene3D Phosphorylase Kinase; domain 1 74 181 - -
Stsc181257g00016 411 ProSiteProfiles Protein kinase domain profile. 105 382 IPR000719 GO:0004672|GO:0005524|GO:0006468
Stsc181257g00016 411 MobiDBLite consensus disorder prediction 31 45 - -
Stsc181257g00016 411 FunFam Serine/threonine-protein kinase PBS1 182 397 - -
Stsc181257g00016 411 ProSitePatterns Protein kinases ATP-binding region signature. 111 134 IPR017441 GO:0005524
Stsc181257g00016 411 PANTHER OS07G0668900 PROTEIN 42 391 - -
Stsc181257g00016 411 ProSitePatterns Serine/Threonine protein kinases active-site signature. 228 240 IPR008271 GO:0004672|GO:0006468
Stsc181257g00016 411 MobiDBLite consensus disorder prediction 387 411 - -
Stsc181257g00016 411 FunFam probable serine/threonine-protein kinase RLCKVII 77 181 - -
Stsc181257g00016 411 MobiDBLite consensus disorder prediction 15 30 - -
Stsc181257g00016 411 Gene3D Transferase(Phosphotransferase) domain 1 182 400 - -
Stsc181257g00016 411 CDD STKc_IRAK 111 380 - -
Stsc181257g00016 411 Pfam Protein kinase domain 111 376 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc181257g00016 Stsc-Chr181257 98997 101858 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc181257g00016 27 384 Glycoside Hydrolase AT3G07070 58.380 1.00e-150 431
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-VIIa-1 Stsc181257g00016 Pkinase 1.1e-46 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc181257g00016 - - gmx:100794680 580.482