Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc181257g00014 ATGGAGCAGTCAGGGAAATCACCCAAGAAATCACTACTCAAACCGTTTACCAGAGATCCACGTGGCTCCCTCGAAGTTTTCAACCCTACCTCCTCCTACTCTCCCGCACCAGCAGTGGGAAATCCTACCGGCTCATCACCGGCGCCGCCGCGTCCTCAGCCTATATGGAAAACCTGGGCGGCAGAGCAGCAGCTGCCTCGCAGTACCTCCTTCGACGAGCTCACCACCACCGCTGCCACGGCCACAGCAACCACTGCCACCTCCTGGATGGCACTCAAGGAAACCGCGCCGATGCCGAGTTCGGAGTCAGGTGAGGCGGCGCAGAGAGCTGCAGAGTGGGGGTTGGTCCTGAAAACGGACACGGAGACCGGGAAGCCTCAGGGAGTAGCGGTTCGAAACTCAGACGGCGGCGGTTCGTCCCGGAGGAACTCAAAAAACTCGGCTCGAAACTCCGGCGACTCGTCGGACGGAGCGGAATCGCGCGGGATCCCGAGAATATCAGAGGACCTGAAGAACGCACTTTCGACGTTCCAACAAACTTTCGTGGTTTCGGATGCTACGAAAGCCGATTACCCGATCCTTTACGCCAGTGCCGGATTCTTCAAGATGACTGGTTACACCTCCAAGGAGGTCATTGGTAGAAACTGTCGGTTTTTACAGGGTGCTGAAACGGATCCGGATGACGTGGCAAGGATAAGGGAAGCATTGGAAACTGGGAAGAGTTACTGTGGAAGGTTACTGAATTACAAGAAGGATGGGACGCCCTTCTGGAACCTTCTTACAATTTCACCCATCAAGGACGAGGATGGCAAAGTCATCAAATTCATCGGAATGCAAGTGGAGGTTAGCAAGCACACGGAGGGGGCCAAGGAGAAAGCGTTACGTCCCAATGGCTTGCCGGAATCATTGATTCGATACGATGCACGGCAGAAAGAGAATGCTACAACTTCAGTGTCGGAGTTGGTGAATGCCATAAAGCGTCCTCGAGCACTCAGTGAATCAACAAACCGCCGTCCCTTCACCAGAAAATCTTTCGCCGGACAAGAGGCAGAGGACAAAGCAGAGAAAACATCAAGGAGAAAATCTGAGAGCATAGCTTCATCTGCTAGACGCAAATCACAAGGAGGAGGAGATGGAGTAACTTCATTGCAGCAAATCAGTGAGCTCCCTGAAAAGAAGCACAAAAACTCCCATCGCCGTTCTTTAATGGGGTTCATGAAGAAAAATCAGGCCGATGAAGAAAGCATAGATAATGAAGGTGTTGAGGAAGTGAGCTCAGAGAGTGAGGATGATGATGAGAGGCCTGATAGTTTTGAATTTGAGGACAAAGTGTTCCAAAGGGAAAAGAGGAAGGGTCTTGATCTTGCTACTACACTTGAACGTATTGAGAAAAACTTTGTCATCACTGATCCTAGGCTCCCTGACAATCCCATTATATTTGCTTCTGACAGTTTCTTAGAGCTTACTGAATATAGTCGTGAAGAAATCTTGGGCAAAAATTGCAGATTTCTTCAAGGACCTGAAACAGATCCAGAAACTGTGAAAAAAATTAGACAAGCAATTGACAACCAAACTGAAGTTACTGTACAACTCATTAATTATACAAAGACCGGTAAAAAGTTCTGGAACTTGTTCCATCTGCAACCTATGCGTGACCAGAAGGGAGAAGTACAGTATTTTATTGGTGTTCAACTCGATGGTAGCCAACATGTGGAGCCTCTTCACAACTGCATTGCAGAAAATACTGCAAAGGAAGGAGAACAATTGGTCAAACAAACTGCAGAAAATGTTGATGAGGCAGTAAGAGAACTTCCAGATGCAAATATGAAACCGGACGATTTATGGATGAATCATTCGAAAGTGGTTCAGCCAAAACCTCACAGGAAGGAAGATGCTGCTTGGAGAGCCATCAAGAAGATCCTGGACAGTGGAGAACAGATAGGCTTAAAGCACTTTAGACCAGTTAAACCTTTAGGATCAGGAGATACTGGAAGTGTGCATCTGGTGGAGCTATGCGGAACTGGTCACTATTTTGCCATGAAGGCTATGGATAAGGGTGTTATGCTCAATCGTAACAAGGTGCATAGAGCTTGCACAGAGAGAGAAATCCTTGACATGTTGGACCATCCTTTTCTACCTGCATTATATGCTTCCTTTCAGACCAAATCACATGTTTGTTTGGTAACTGATTACTGCCCTGGGGGAGAACTCTTCCTGCTTCTTGATCGACAGCCAACAAAAGTTCTTAAGGAAGAGGCTGCCAGATTTTATGCTGCTGAGGTAGTGGTTGCATTGGAGTATCTTCATTGTCAAGGAATAATATATCGGGACTTGAAGCCAGAAAATGTGTTAATCCAGAGCAATGGGCATGTGGCTCTAACAGATTTTGATTTGTCATGTTTAACATCTTGCAAGCCCCAGCTACTTCTACCAGCCACGGATGACAAGAAGAAGAAGAAGAAAAAACAACAGAAAGGTCAACAGGTTCCGGTGTTTATGGCTGAACCAATGAGAGCATCGAATTCTTTTGTTGGAACAGAAGAGTACATAGCTCCGGAAATTATAACTGGTTCAGGCCATAGTAGTGCTGTGGATTGGGGAAAGTCAAGGCAAAAAACATTTGCAAATATTCTACACAAGGATCTTAAATTTCCCAAAAGCAAACCATTAAGTCTCCATGGAAAGCAGCTAATTTATTGGTTGTTGCAGAGAGATCCCAAGAACAGATTGGGTTCACGAGAAGGAGCAAATGAAATTAAGCGTCATCCATTCTTTAAGTCTGTCAATTGGGCATTAGTCCGCTGCATGACACCTCCTGAGCTTGATGCTCCTCTCTCGCTGGAAAATGAAGTCAAAGTGGACCCTGAATTGGAGGATCTGCAGCTAACTGTTTTCTGA 2898 0.4658 MEQSGKSPKKSLLKPFTRDPRGSLEVFNPTSSYSPAPAVGNPTGSSPAPPRPQPIWKTWAAEQQLPRSTSFDELTTTAATATATTATSWMALKETAPMPSSESGEAAQRAAEWGLVLKTDTETGKPQGVAVRNSDGGGSSRRNSKNSARNSGDSSDGAESRGIPRISEDLKNALSTFQQTFVVSDATKADYPILYASAGFFKMTGYTSKEVIGRNCRFLQGAETDPDDVARIREALETGKSYCGRLLNYKKDGTPFWNLLTISPIKDEDGKVIKFIGMQVEVSKHTEGAKEKALRPNGLPESLIRYDARQKENATTSVSELVNAIKRPRALSESTNRRPFTRKSFAGQEAEDKAEKTSRRKSESIASSARRKSQGGGDGVTSLQQISELPEKKHKNSHRRSLMGFMKKNQADEESIDNEGVEEVSSESEDDDERPDSFEFEDKVFQREKRKGLDLATTLERIEKNFVITDPRLPDNPIIFASDSFLELTEYSREEILGKNCRFLQGPETDPETVKKIRQAIDNQTEVTVQLINYTKTGKKFWNLFHLQPMRDQKGEVQYFIGVQLDGSQHVEPLHNCIAENTAKEGEQLVKQTAENVDEAVRELPDANMKPDDLWMNHSKVVQPKPHRKEDAAWRAIKKILDSGEQIGLKHFRPVKPLGSGDTGSVHLVELCGTGHYFAMKAMDKGVMLNRNKVHRACTEREILDMLDHPFLPALYASFQTKSHVCLVTDYCPGGELFLLLDRQPTKVLKEEAARFYAAEVVVALEYLHCQGIIYRDLKPENVLIQSNGHVALTDFDLSCLTSCKPQLLLPATDDKKKKKKKQQKGQQVPVFMAEPMRASNSFVGTEEYIAPEIITGSGHSSAVDWGKSRQKTFANILHKDLKFPKSKPLSLHGKQLIYWLLQRDPKNRLGSREGANEIKRHPFFKSVNWALVRCMTPPELDAPLSLENEVKVDPELEDLQLTVF 965
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc181257g00014 965 SUPERFAMILY PYP-like sensor domain (PAS domain) 187 279 IPR035965 -
Stsc181257g00014 965 CDD PAS 466 566 IPR000014 -
Stsc181257g00014 965 CDD STKc_phototropin_like 650 949 - -
Stsc181257g00014 965 ProSiteProfiles Protein kinase domain profile. 652 925 IPR000719 GO:0004672|GO:0005524|GO:0006468
Stsc181257g00014 965 MobiDBLite consensus disorder prediction 1 88 - -
Stsc181257g00014 965 Gene3D PAS domain 440 604 - -
Stsc181257g00014 965 MobiDBLite consensus disorder prediction 133 157 - -
Stsc181257g00014 965 SMART pac_2 243 285 IPR001610 -
Stsc181257g00014 965 SMART pac_2 528 570 IPR001610 -
Stsc181257g00014 965 ProSiteProfiles PAC domain profile. 240 294 IPR000700 -
Stsc181257g00014 965 ProSitePatterns Serine/Threonine protein kinases active-site signature. 773 785 IPR008271 GO:0004672|GO:0006468
Stsc181257g00014 965 Gene3D PAS domain 180 338 - -
Stsc181257g00014 965 Gene3D Transferase(Phosphotransferase) domain 1 869 938 - -
Stsc181257g00014 965 MobiDBLite consensus disorder prediction 416 437 - -
Stsc181257g00014 965 MobiDBLite consensus disorder prediction 119 162 - -
Stsc181257g00014 965 Gene3D Phosphorylase Kinase; domain 1 650 731 - -
Stsc181257g00014 965 MobiDBLite consensus disorder prediction 24 41 - -
Stsc181257g00014 965 Pfam PAS domain 189 283 IPR000014 -
Stsc181257g00014 965 Pfam PAS domain 474 566 IPR000014 -
Stsc181257g00014 965 ProSiteProfiles PAS repeat profile. 451 524 IPR000014 -
Stsc181257g00014 965 FunFam LOV domain-containing protein 440 604 - -
Stsc181257g00014 965 PANTHER FLIPPASE KINASE 1-RELATED 391 866 - -
Stsc181257g00014 965 Pfam Protein kinase domain 655 866 IPR000719 GO:0004672|GO:0005524|GO:0006468
Stsc181257g00014 965 SUPERFAMILY Protein kinase-like (PK-like) 639 944 IPR011009 -
Stsc181257g00014 965 ProSiteProfiles PAC domain profile. 525 579 IPR000700 -
Stsc181257g00014 965 MobiDBLite consensus disorder prediction 368 387 - -
Stsc181257g00014 965 FunFam Putative LOV domain-containing protein 180 336 - -
Stsc181257g00014 965 ProSitePatterns Protein kinases ATP-binding region signature. 658 681 IPR017441 GO:0005524
Stsc181257g00014 965 NCBIfam PAS domain S-box protein 476 566 IPR000014 -
Stsc181257g00014 965 NCBIfam PAS domain S-box protein 192 287 IPR000014 -
Stsc181257g00014 965 CDD PAS 193 282 IPR000014 -
Stsc181257g00014 965 SMART pas_2 453 522 IPR000014 -
Stsc181257g00014 965 SMART pas_2 168 237 IPR000014 -
Stsc181257g00014 965 ProSiteProfiles PAS repeat profile. 166 237 IPR000014 -
Stsc181257g00014 965 Gene3D Transferase(Phosphotransferase) domain 1 732 866 - -
Stsc181257g00014 965 SMART serkin_6 652 925 IPR000719 GO:0004672|GO:0005524|GO:0006468
Stsc181257g00014 965 MobiDBLite consensus disorder prediction 62 88 - -
Stsc181257g00014 965 MobiDBLite consensus disorder prediction 329 437 - -
Stsc181257g00014 965 FunFam LOV domain-containing protein 651 735 - -
Stsc181257g00014 965 FunFam Serine/threonine-protein kinase OXI1 736 804 - -
Stsc181257g00014 965 SUPERFAMILY PYP-like sensor domain (PAS domain) 467 566 IPR035965 -
Stsc181257g00014 965 MobiDBLite consensus disorder prediction 344 367 - -
Stsc181257g00014 965 Coils Coil 583 603 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc181257g00014 Stsc-Chr181257 84063 91005 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc181257g00014 1 965 AGC Kinase Gene Family AT3G45780 66.862 0.0 1299
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK AGC_RSK-2 Stsc181257g00014 Pkinase 3e-43 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc181257g00014 K20715 - gmx:100817565 1433.31