Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc181257g00010 ATGTATGCACACTCCAACTGCACCGAATCCACACGCGCCACCGATTACCCGCCAATGCACCTCTTCCCGGAGGAACTCGTCCTCACGGAATTGGAATCGCTTCTCAACTGCAACAACCCGGAGATAACAAACTTCAACAACAACAGTAGTAGCAGCAGTGAGCAATCAGGGTTGGCGATGCAGAGGAGCGTTAGCACTCACTCTCTCCATAACAATCCCTTCTCCAGTCTCTTGGCTGACTTGTTCCATAACCACAATCCTCTCCGGAGAGTTTGCAGCACCGGTGATCTCCATGGGAGTCATGGCGGGGTGATGCATAATAATGAATCAGAAAGTCCATTGTCAAGTGAAAGCAGCATGATCATAGAAGGAATGAGTAGAGCTTCTAGGTATAGCCCTGAGGAGAAGAAACTCAGGATTCAGAGGTATAGAACCAAGAGAAACCAGAGAAACTTCAACAAGAAAATTAAGTATGTTTGCAGGAAGACTTTAGCAGACAGCAGGCCGCGCATTAGAGGACGATTTGCCAGGAACGACGAAATAACTGACAAGAATAATCCTTCATCAGTTCATCAATGGAGTCACATTGGTGCTGGAGCAGAGGAAGACGAAGAAGATCAAAATTGGGGCTCTATATTTGATTCACTAGTGGCTCCAAATACAGATCAAGAGTCCCAGAACAGTTCTTCATTCGGTTTATTGTATTAA 708 0.459 MYAHSNCTESTRATDYPPMHLFPEELVLTELESLLNCNNPEITNFNNNSSSSSEQSGLAMQRSVSTHSLHNNPFSSLLADLFHNHNPLRRVCSTGDLHGSHGGVMHNNESESPLSSESSMIIEGMSRASRYSPEEKKLRIQRYRTKRNQRNFNKKIKYVCRKTLADSRPRIRGRFARNDEITDKNNPSSVHQWSHIGAGAEEDEEDQNWGSIFDSLVAPNTDQESQNSSSFGLLY 235
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc181257g00010 235 ProSiteProfiles CCT domain profile. 136 178 IPR010402 GO:0005515
Stsc181257g00010 235 MobiDBLite consensus disorder prediction 216 235 - -
Stsc181257g00010 235 MobiDBLite consensus disorder prediction 45 64 - -
Stsc181257g00010 235 Pfam CCT motif 138 178 IPR010402 GO:0005515
Stsc181257g00010 235 PANTHER ZINC FINGER PROTEIN CONSTANS-LIKE 4 56 198 IPR045281 GO:0009909
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc181257g00010 Stsc-Chr181257 52895 54192 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc181257g00010 128 186 C2C2-CO-like Transcription Factor Family AT5G15850 42.373 1.72e-11 61.2
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Others Stsc181257g00010 CCT 2.4e-17 CL0281
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc181257g00010 - - ccaj:109806671 238.039