Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Stsc181256g00029 | ATGTTGCCATTTGTAGCTAGTAGTTCAAGGAGCGAAATAAGCCACTTGGCCTCAGTTCCCAGCAGCCTCTTACCAGCATTTGGCACCAACTTTGGTGAAGGGTACTTGAACCTTAGAAAATATGTAATAGCTCCCTATAACCGTAGATATAGGCTGTGGCAAACGTTCTTAGTTTCCTTGGTGGTTTACTCTGCATGGGCATCTCCATTCGAGCTAGCTTTCAGAGAACTGTCAATTGGGCTGCTGGTGCCAGTTGATCTCATTGTGGATGGCTTCTTTGCCATTGATATTGTCCTTACTTTCTTTGTGGCTTATTTGGATAAATCAACTTATCTCCTAGTTGATGATCATAAGAAGATTGCTATAAGATATATTAAAATGTTACACTTCCCAATGGATCTAGCATCCACCCTCCCTTTCGATCAGATATACCAAATTCTGACAAGCAAACGGCAGGGGCCCGAGGTCTTTGGTTTCCTATATATGCTTAGACTATGGCGATTGAGACATGTTAGCCAATTCTTCTCAAGGCTAGAGAAAGATATACGAATTAGCTACACTACAACAAGATTTTGTAAGCTTATATGTGTTACGCTATTTGCAGTGCACTTCGCAGGCTGCATGTACTTTTGGTTGGCTTTCCATCACAAAACACCGGAAAATACATGGCTCGGACACAAGGAACTACCGGATTTTAAGCATAGGAGTGTCTGGTTGTGTTACATCTATTCCATGTACTGGTCTATAACAACTCTTACCACTGTTGGCTATGGAGATTTATATGCAGTGAATACAGTGGAGAAGGTTTACAGTAGCTTATATATGCTGTTCAACATAGGCCTCACAGCATATATAATCGGAAACATGACAAATCTGGCTGTTCATAACACCGTCCGAACCTTTGCAATGAGGGATGCCTTTAACAGAGTGTTGCGATATGCAAACAAAAGTAGACTCCCAAAACGTTTGAAAGAACAAATGTTAGCGCATAAAGAATTGAAACTTAAGACGGAAGTGTTACAGCAAGAAGTGCTAGGGGACCTCCCAAAAGCAATTAGATCCAGTATTGCACATCATCTCTTCAGCAACGTAGTTGAAAAAGCATATTTATTTAAAGGAGTCTCTGATGAATATATCACTCAGCTGGATCTATTTCTACACAAGAATGGAACTGAACAGCTTTTGTTTAAATTAGAACCAGGAGGCATGGCGGGAGAAATAGGTGGGATGTTTAATATTCCACAACCTTTTACAGTTAGAACTAGGAGGCTCTCCCAGGTCATACGAATCAACCAACATCAGTTCAAGCAGATCGTGCAACCATTTAATAATGATGGGAAGAAAATCATCAACAACTTCGTTAAGTATTTGAGAGACCAAAGAGGCAGCGTGCTAGAAGAACTACCATACTTGGCAGATTTGCTAGGAGACCTGTATCTCGAGCATATAACACAAAATGGGGACTCACATGATGATGGACCAGGAAGGACTAGAAATTCCAATCCACAGTTAAGCTCAGCTCCCACTAGAGTAATAATCCATGGTCATCACCTCAATGAAAAGGAAATGGGAAAAGGAGAAATGAAAAAGCTCATACTTCTGCCGAGTTCAATAGAAGATCTTTTGAGAATAGCAGAGAAAAAGTTCGGGAAAAGAGGAAGCAAGATTCTTATGGCAGATGGCTCAGAAGTAGAAGAAATAAACGTTTTAAGAGATCATGACGAGTTATACATCTTTTAA | 1740 | 0.404 | MLPFVASSSRSEISHLASVPSSLLPAFGTNFGEGYLNLRKYVIAPYNRRYRLWQTFLVSLVVYSAWASPFELAFRELSIGLLVPVDLIVDGFFAIDIVLTFFVAYLDKSTYLLVDDHKKIAIRYIKMLHFPMDLASTLPFDQIYQILTSKRQGPEVFGFLYMLRLWRLRHVSQFFSRLEKDIRISYTTTRFCKLICVTLFAVHFAGCMYFWLAFHHKTPENTWLGHKELPDFKHRSVWLCYIYSMYWSITTLTTVGYGDLYAVNTVEKVYSSLYMLFNIGLTAYIIGNMTNLAVHNTVRTFAMRDAFNRVLRYANKSRLPKRLKEQMLAHKELKLKTEVLQQEVLGDLPKAIRSSIAHHLFSNVVEKAYLFKGVSDEYITQLDLFLHKNGTEQLLFKLEPGGMAGEIGGMFNIPQPFTVRTRRLSQVIRINQHQFKQIVQPFNNDGKKIINNFVKYLRDQRGSVLEELPYLADLLGDLYLEHITQNGDSHDDGPGRTRNSNPQLSSAPTRVIIHGHHLNEKEMGKGEMKKLILLPSSIEDLLRIAEKKFGKRGSKILMADGSEVEEINVLRDHDELYIF | 579 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Stsc181256g00029 | 579 | Gene3D | Jelly Rolls | 364 | 466 | IPR014710 | - | |
| Stsc181256g00029 | 579 | Coils | Coil | 323 | 343 | - | - | |
| Stsc181256g00029 | 579 | Gene3D | - | 51 | 294 | - | - | |
| Stsc181256g00029 | 579 | PRINTS | EAG/ELK/ERG potassium channel family signature | 97 | 106 | IPR003938 | GO:0005249|GO:0006813|GO:0016020 | |
| Stsc181256g00029 | 579 | PRINTS | EAG/ELK/ERG potassium channel family signature | 285 | 294 | IPR003938 | GO:0005249|GO:0006813|GO:0016020 | |
| Stsc181256g00029 | 579 | PRINTS | EAG/ELK/ERG potassium channel family signature | 241 | 258 | IPR003938 | GO:0005249|GO:0006813|GO:0016020 | |
| Stsc181256g00029 | 579 | PRINTS | EAG/ELK/ERG potassium channel family signature | 86 | 96 | IPR003938 | GO:0005249|GO:0006813|GO:0016020 | |
| Stsc181256g00029 | 579 | PRINTS | EAG/ELK/ERG potassium channel family signature | 267 | 278 | IPR003938 | GO:0005249|GO:0006813|GO:0016020 | |
| Stsc181256g00029 | 579 | FunFam | Potassium channel KAT3 | 52 | 295 | - | - | |
| Stsc181256g00029 | 579 | MobiDBLite | consensus disorder prediction | 485 | 508 | - | - | |
| Stsc181256g00029 | 579 | CDD | CAP_ED | 344 | 450 | IPR000595 | - | |
| Stsc181256g00029 | 579 | ProSiteProfiles | KHA domain profile. | 510 | 579 | IPR021789 | - | |
| Stsc181256g00029 | 579 | ProSiteProfiles | cAMP/cGMP binding motif profile. | 381 | 456 | IPR000595 | - | |
| Stsc181256g00029 | 579 | SUPERFAMILY | Voltage-gated potassium channels | 45 | 292 | - | - | |
| Stsc181256g00029 | 579 | Pfam | KHA, dimerisation domain of potassium ion channel | 510 | 578 | IPR021789 | - | |
| Stsc181256g00029 | 579 | SUPERFAMILY | cAMP-binding domain-like | 300 | 458 | IPR018490 | - | |
| Stsc181256g00029 | 579 | PANTHER | POTASSIUM CHANNEL AKT1 | 383 | 463 | IPR045319 | GO:0005249|GO:0006813 | |
| Stsc181256g00029 | 579 | Pfam | Ion transport protein | 51 | 293 | IPR005821 | GO:0005216|GO:0006811|GO:0016020|GO:0055085 |
Duplication type information
| Select | Gene | Chromosome | Start | End | Duplicated_type |
|---|---|---|---|---|---|
| Stsc181256g00029 | Stsc-Chr181256 | 272411 | 277975 | Transposed |
Functional genes information
| Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
|---|---|---|---|---|---|---|---|---|
| Stsc181256g00029 | 9 | 579 | Ion Channels | AT4G32650 | 51.133 | 0.0 | 579 |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Stsc181256g00029 | K21867 | - | gmx:100794620 | 779.63 |