Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc181256g00016 ATGATTAAACATACGAATAATATTTTAAAAAATACGGATTTTAGAAAGAAAAATAGCAAAAACCCTAATTTTCCCAATCTACCATCATCACTCATTCACTCCTCGACCCTCGTCTCCTTGCTCTCCACTCTCGCCGTCTCACGCAGCCAGGCTAGGAACCTTCACGGCCTCGCAACCGGATCGCTGCCGCCTGTCCAATCGTCGACTCGCCGTGCTGACGCCGCCAGCACCGTCGCCGTTCACTCGTCCTTCGTCCTCCACTCCGCGCGCCCGTGTTGTCCTTCGTCTTCGTCCTCTGCTCTGCCTCCGCCCTCCGCCCGTGCCGTCACCGTGCTGCTCTGCATCCGACCTCCGCTCTCCGTGACTGGGGCTAATTTCTTACAATTCGTCACGCACCTCCATTCAAGTTATACGTTGATAATGGCAGAAGATAACAATGAAGTCACACAAACCTTTAAGGATTTGGGCTTATCCGAGGAATTGTTTGAAGCTTTGGGGTCTGAAATTGGTGTCAAGTGTGCTGTGCTTGTTGGAGGGATTGACATGGTACAACAATCCATCAAGATAGCAAAGCAACCTCATATTATTGTCGGAACACCAGGACGCATTTTAGATCACCTCAAAAACACCAAAGGATTTTCTCTTAATAGATTAAAATATCTGGTCCTAGATGAGGCGGACAGGCTGTTGAATGAGGACTTTGAGGAATCACTCAATGAGATTATACAACTGATTCCTCGTGAGCGGAGAACATTTCTGTTTTCTGCTACAATGACTAAGAAGGTCCAAAAGCTCCAAAGAGTTTGTTTAAGGAATCCTGTGAAGATTGAAGCGGCCTCGAAGTATTCCACCGTTGACACACTGAAGCAGCAGTATCGTTTCCTACCTGCCAAACATAAGGATTGCTACCTTGTGTACATTCTTAGTGAAATGGCTGGAAGTACATCGATGGTGTTCACTCGTACATGTGATTCAACTCGTCTTCTGGCTTTGATTCTTAGTAATCTTGGTCTAAAAGCCATCCCAATTAATGGTCATATGACCCAGTCAAAGAGACTTGGTGCCTTGAATTTGTTCAAGTCTGGGGCGCGCAATATTCTCATTTGTACCGATGTAGCTAGTAGAGGACTCGATATTCCAACAGTAGATGTTGTGATTAACTACGACATCCCTACAAACTCCAAAGATTATATACATCGTGTAGGAAGAACTGCTCGTGCAGGGCGCTCCGGGGTTGCCATTTCTCTTGTGAACCAATATGAGCTGGAATGGTACATTCAAATTGAGAAACTCATAGGCAAGAAGCTACCAGAATATCCTGCACAAGAAGAGGAAGTTCTGCTCTTGGAGGAGCGGGTTAGCGAGGCCAAACGATTATCAGTAATGAAAATGAAGGAGGAAGCCATAGGGAAGAAGAAACGGAGAGGTGAATCAGATTATGGTGAAGAAGATATTGACAAATACTTGGGTCTCAAGGATAAGAAATCATCCAAAAAGTTCAGAAGATGA 1509 0.4533 MIKHTNNILKNTDFRKKNSKNPNFPNLPSSLIHSSTLVSLLSTLAVSRSQARNLHGLATGSLPPVQSSTRRADAASTVAVHSSFVLHSARPCCPSSSSSALPPPSARAVTVLLCIRPPLSVTGANFLQFVTHLHSSYTLIMAEDNNEVTQTFKDLGLSEELFEALGSEIGVKCAVLVGGIDMVQQSIKIAKQPHIIVGTPGRILDHLKNTKGFSLNRLKYLVLDEADRLLNEDFEESLNEIIQLIPRERRTFLFSATMTKKVQKLQRVCLRNPVKIEAASKYSTVDTLKQQYRFLPAKHKDCYLVYILSEMAGSTSMVFTRTCDSTRLLALILSNLGLKAIPINGHMTQSKRLGALNLFKSGARNILICTDVASRGLDIPTVDVVINYDIPTNSKDYIHRVGRTARAGRSGVAISLVNQYELEWYIQIEKLIGKKLPEYPAQEEEVLLLEERVSEAKRLSVMKMKEEAIGKKKRRGESDYGEEDIDKYLGLKDKKSSKKFRR 502
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc181256g00016 502 Gene3D - 285 454 IPR027417 -
Stsc181256g00016 502 SMART ultradead3 114 291 IPR014001 -
Stsc181256g00016 502 Pfam Helicase conserved C-terminal domain 302 408 IPR001650 -
Stsc181256g00016 502 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 162 429 IPR027417 -
Stsc181256g00016 502 MobiDBLite consensus disorder prediction 1 27 - -
Stsc181256g00016 502 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 287 447 IPR001650 -
Stsc181256g00016 502 CDD SF2_C_DEAD 288 417 - -
Stsc181256g00016 502 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 159 276 IPR014001 -
Stsc181256g00016 502 SMART helicmild6 327 408 IPR001650 -
Stsc181256g00016 502 PANTHER ATP-DEPENDENT RNA HELICASE RHLE-RELATED 162 468 - -
Stsc181256g00016 502 ProSitePatterns DEAD-box subfamily ATP-dependent helicases signature. 222 230 IPR000629 -
Stsc181256g00016 502 Pfam DEAD/DEAH box helicase 162 265 IPR011545 GO:0003676|GO:0005524
Stsc181256g00016 502 Gene3D - 130 284 IPR027417 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc181256g00016 Stsc-Chr181256 139951 145800 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc181256g00016 159 447 Eukaryotic Initiation Factors Gene Family AT1G72730 30.690 8.77e-42 152
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc181256g00016 K14777 - gmx:100775796 613.609