Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc181256g00010 ATGAGAATGAACAAAGAAAATAAAGCAGCCAGTGCCAAAGTCGAAGAGCGTCCACATCGAATCACAAGAGCGAGGGCTAAGGTCTTAGGATCAGTTGGAGGGATACCACCCTACTCAAGACCATCTTTTAAAAATGAGCAGAAACATGTACTTAGAGGAAATTTCAGAAGAACAGGTTCTGATGAGAACAAAACTTCTGTAGTCGTTGATCCGCTCGATAAGAGGAAACAAGTGCTTACTGATGTAACTAACATCAGTAATAATGCTTCAAAGTTTCAGGCAAGAAGAGTTAATAAGAAGAAAAACACAAAGCCGGCTTCAAATGTCTCATTTGAAGTTTCAGCATCACAAGGGCATGTTAGAGCAAAGTTAGCTGAAGAAGCATCCACAATAAGGGTGGTAGAATCACATGACACCACTGGTGAACATTGTATGTCTAATAGCATCAGAGAACATGGTATCACAGATAACGCGCTTTCAGTACAAGACACTGCAAAATCTGATGATCCGAGCTCTCCAAATAAAGACATCGATATGATCTGTGAGAAACTAGGAGCATCAGATTGCTTGGCCATTGTGGACATTGATTCCGAGATAAAGGATCCTGAAGTTTGGAGTTCTTATGCACCTGAAATATACAATAATATTCGTGTCACAGAGCTTTCGAGGAGACCAATGACCAAGTACATGGGAGAGTTGCAGCAAGATATCAGTCCTAACATGAGGGGAATTTTGATTGATTGGCTTGTGGAGGTTACCGAAGAATATAACTTGGTTCCGGATACTCTTTACCTTACAGTAAACCTCATTGATAGGTATCTGTCAACAAAATTGATGCAAAAACAGAGGCTCCAGTTGCTTGGTGTTACTTGCATGCTCATTGCATCAAAGTATGAAGAGATTTGTGCTCCTAGAGTGGAGGAATTTTGCTTCATCACAGATAACACATACACAAAAGAAGAGGTATTGAAAATGGAGAGTGAAGTTCTAAACATTTTGCATTTTCATTTATCTGTTCCCACAACCAAAACATTTCTGAGGAGATTCATCCAAGCCGCACAATCTTCATACAAGGTTCCTCGCATCGAATTGGAATTCTTGGCAAATTATTTAGCAGAGCTTACCCTAGTTGAGTACAGTTTCTTGCAGTATCTGCCTTCCCTTATAGCTGCATCTGCTGTGTTCCTTGCAAGATGGACTTTAAACCAATCAGAACATCCATGGAATCCAACCCTGGAACACTATACAAACTACAAAGCCTCAGAGCTTGAAACTGTTGTGCTTGAACTTGTAGATTTGCAGCTCAATACCAAAGGCAGTTCCCTGAATGCCATACGTGAAAAGTATAAACAAGAGAAGTTCAATAGTGTGGCAACACTGCCTCCAAATCCAAAACCAGTGCAATCGCTCTTCCAAAGTTCAAGTGTAAATTAA 1434 0.4031 MRMNKENKAASAKVEERPHRITRARAKVLGSVGGIPPYSRPSFKNEQKHVLRGNFRRTGSDENKTSVVVDPLDKRKQVLTDVTNISNNASKFQARRVNKKKNTKPASNVSFEVSASQGHVRAKLAEEASTIRVVESHDTTGEHCMSNSIREHGITDNALSVQDTAKSDDPSSPNKDIDMICEKLGASDCLAIVDIDSEIKDPEVWSSYAPEIYNNIRVTELSRRPMTKYMGELQQDISPNMRGILIDWLVEVTEEYNLVPDTLYLTVNLIDRYLSTKLMQKQRLQLLGVTCMLIASKYEEICAPRVEEFCFITDNTYTKEEVLKMESEVLNILHFHLSVPTTKTFLRRFIQAAQSSYKVPRIELEFLANYLAELTLVEYSFLQYLPSLIAASAVFLARWTLNQSEHPWNPTLEHYTNYKASELETVVLELVDLQLNTKGSSLNAIREKYKQEKFNSVATLPPNPKPVQSLFQSSSVN 477
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc181256g00010 477 CDD CYCLIN_AtCycA-like_rpt2 340 454 - -
Stsc181256g00010 477 SMART Cyclin_C_2 340 463 IPR004367 -
Stsc181256g00010 477 MobiDBLite consensus disorder prediction 1 20 - -
Stsc181256g00010 477 FunFam Mitotic cyclin 6 225 325 - -
Stsc181256g00010 477 FunFam Cyclin A1 327 459 - -
Stsc181256g00010 477 SUPERFAMILY Cyclin-like 339 462 IPR036915 -
Stsc181256g00010 477 ProSitePatterns Cyclins signature. 242 273 IPR006671 -
Stsc181256g00010 477 PANTHER CYCLINS 165 451 IPR039361 -
Stsc181256g00010 477 Pfam Cyclin, C-terminal domain 340 462 IPR004367 -
Stsc181256g00010 477 Pfam Cyclin, N-terminal domain 211 337 IPR006671 -
Stsc181256g00010 477 SUPERFAMILY Cyclin-like 201 337 IPR036915 -
Stsc181256g00010 477 SMART cyclin_7 247 331 IPR013763 -
Stsc181256g00010 477 SMART cyclin_7 344 432 IPR013763 -
Stsc181256g00010 477 PIRSF Cyclin_A_B_D_E 8 475 IPR046965 GO:0016538|GO:0044772
Stsc181256g00010 477 Gene3D - 211 459 - -
Stsc181256g00010 477 Gene3D - 225 338 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc181256g00010 Stsc-Chr181256 78445 85924 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc181256g00010 5 471 Core Cell Cycle Gene Families AT5G25380 51.907 1.48e-155 447
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc181256g00010 K06627 - gmx:547780 624.394