Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc181255g00027 ATGCTCACACATATGCTCATTCTTTTGATTGATACATATGATCCTCTTACCTTCATTTCAGCTGGTGCATGCGGATTTGGTTCTTTTGGTGCTACCATTAATGGTGGCGATGTATCAGCTGCGTCCAATCTTTACCGAAATGGTGTTGGCTGTGGCTCCTGTTACCAGGTAAGGTGCACAAACAATACCTATTGCTCAGACAATGGCGTCACCGTAGTTATAACTGACCAAGGCTCAGGTGATAACACTGACTTCATTCTGAGTCAACGAGCCTTTGGTGGGATGGCTCAGACCAGTGATGAAGCTCCTTATCTATTAGCTCTGGGCATAGTTGATATTGAATACAGACGGTATGATGTTGTTCTAAACAGATAA 375 0.4347 MLTHMLILLIDTYDPLTFISAGACGFGSFGATINGGDVSAASNLYRNGVGCGSCYQVRCTNNTYCSDNGVTVVITDQGSGDNTDFILSQRAFGGMAQTSDEAPYLLALGIVDIEYRRYDVVLNR 124
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc181255g00027 124 Gene3D - 11 119 IPR036908 -
Stsc181255g00027 124 PANTHER EXPANSIN-B3 21 118 - -
Stsc181255g00027 124 Pfam Lytic transglycolase 41 115 IPR009009 -
Stsc181255g00027 124 ProSiteProfiles Expansin, family-45 endoglucanase-like domain profile. 21 117 IPR007112 -
Stsc181255g00027 124 SUPERFAMILY Barwin-like endoglucanases 17 118 IPR036908 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc181255g00027 Stsc-Chr181255 240625 241301 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc181255g00027 22 117 Expansin Gene Family AT4G17030 53.608 7.05e-30 106
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc181255g00027 - - egr:104443585 176.792