Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc181255g00026 ATGAGAGACATAACTGCTGTGCAACTCTGTGAGACGCAGAACTTTGTCTGCAAGTTACTGGATCGGACTCATGGAGCAGTCTGGACTTCTACCTCTCCACCAAGTGGACCTCTTTCGTTACGGATGCTGTTTAGTGCTGAAGATGGAGAACAAACATGGGTTGTCCCCATTAGTAACATACCAGAAGACTGGAAGGCTGGAGAGACATATGACTCAGGGGTGCAAGTGGACAAATAG 237 0.4768 MRDITAVQLCETQNFVCKLLDRTHGAVWTSTSPPSGPLSLRMLFSAEDGEQTWVVPISNIPEDWKAGETYDSGVQVDK 78
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc181255g00026 78 Pfam Expansin C-terminal domain 3 55 IPR007117 -
Stsc181255g00026 78 ProSiteProfiles Expansin, Cellulose-binding-like domain profile. 1 72 IPR007117 -
Stsc181255g00026 78 PANTHER EXPANSIN-B3 2 75 - -
Stsc181255g00026 78 Gene3D - 1 76 IPR036749 -
Stsc181255g00026 78 SUPERFAMILY PHL pollen allergen 3 72 IPR036749 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc181255g00026 Stsc-Chr181255 239815 240406 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc181255g00026 3 76 Expansin Gene Family AT4G38400 32.000 6.45e-11 54.3
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc181255g00026 - - rcu:8263701 138.658