Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc181254g00031 ATGTCAAGCATTCAAATGTCTCATGTGGATTTGGAGCAAGGAAGAATCCTCCACCACCACAACCACCACCACCAGCACCATAGCTCAGTGACTGGGAGTGACATTAGTCTATGCTTCTCTGATGCAGATGATGGAGCCTCATGCTACTCCCATTTCTACTCCACAAATGGTGGTGGATCCTATGATGAAGATTGCTGCTCCTATGTTGAGATTGAAATTGAAAGTGGGGTACCTGAGATTAAGGTGCATTTGAACACAAACAATAAAGTTGAGAGTAGGGATTGCAGGATTTGCCACCTTGGTTTGGAAAGTGATGATGGGAACAATGAATCTGAATCTGGTGTTCCAATTGAATTGGGTTGTTCTTGTAAAGATGATCTTGCTGCTGCTCACAAGAATTGTGCAGAGGCTTGGTTCAAGATTAAGGGTAACAGGACCTGTGAAATTTGCCACACAATTGCAAGGAATGTGTATTCAGCAAGTGAGGACACAACAGAGATATTGAATGACACTAACAACAATAATAATAGTGTCACTGTTGGAGGCTCAGCATCCACAACAATCTCAGCACCTTCATCATCATCATCACCATCAGAAACCAGAAGATTTTGGCATGGCCATCGTTTCCTCAATTTTCTCCTTGCTTGTATGGTCTTTGCATTTGTCATATCATGGCTTTTTCACTTCAATGTTCCATCTTCATAA 705 0.4199 MSSIQMSHVDLEQGRILHHHNHHHQHHSSVTGSDISLCFSDADDGASCYSHFYSTNGGGSYDEDCCSYVEIEIESGVPEIKVHLNTNNKVESRDCRICHLGLESDDGNNESESGVPIELGCSCKDDLAAAHKNCAEAWFKIKGNRTCEICHTIARNVYSASEDTTEILNDTNNNNNSVTVGGSASTTISAPSSSSSPSETRRFWHGHRFLNFLLACMVFAFVISWLFHFNVPSS 234
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc181254g00031 234 ProSiteProfiles Zinc finger RING-CH-type profile. 87 157 IPR011016 GO:0008270
Stsc181254g00031 234 SMART ringv_2 94 151 IPR011016 GO:0008270
Stsc181254g00031 234 MobiDBLite consensus disorder prediction 170 198 - -
Stsc181254g00031 234 SUPERFAMILY RING/U-box 89 154 - -
Stsc181254g00031 234 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 81 162 IPR013083 -
Stsc181254g00031 234 PANTHER ZINC FINGER, RING-CH-TYPE 31 233 - -
Stsc181254g00031 234 Pfam RING-variant domain 95 150 IPR011016 GO:0008270
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc181254g00031 Stsc-Chr181254 239169 242965 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc181254g00031 69 234 C3H Transcription Factor Family AT5G05830 56.024 2.26e-57 179
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc181254g00031 - - gmx:100813946 272.322