Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc181254g00030 ATGGACCCTCCCGAAGAAACCGCCACCACCACCCTCGATCACGAAGCAGCTTCCACCGGCACAGATGCCGCTGCGGACACCGGGAGCGGCGACGACGTAGCCGAAGCTGGTGGAAGTGGCGGAGCCACTGGTGGTGGCAGCGGAAGTAACAGAGACAGGGTGAAGGGACCTTGGTCGCCAGAAGAGGACGCGATTTTGAGCCGTTTGGTGAGCAAGTTTGGCGCCAGGAATTGGAGCCTCATCGCCCGCGGGATTAACGGCAGATCCGGCAAGTCCTGCCGCCTACGGTGGTGCAACCAGCTCGACCCTGCCGTTAAGCGCAAGCCCTTTACTGATGAGGAGGACCATATCATAGTTTCTGCTCATGCAATCCATGGGAATAAATGGGCAGCCATAGCCAGGCTTCTTCCAGGAAGAACAGATAATGCCATTAAAAACCACTGGAATTCCACTTTGAGGCGTCGAGGAGTTGAGCATGATAAGATTAAGGTAGAATCTAGTAACATGGTGGAAGATGTTAGCCTCGACAAAGCCAAAGCATCCTCCGAAGAAACACTTTCATGTGATGTTAATTCATTGAGATCCTCTGAAGGAAGAGATGTTAGTTCTGCAGAGCCCATGGATGATAAATACGAAGAAAAATCACTGACCGAGGGTCAACTGTACCATGAAGTCAAGGATCCGCCTACCCTTTTTCGGCCAAAGGCACGAATTAGTGCTTTTAGTGTATATCACACTTTTGATGGTTTCCAACCTTCAACATCAATTCAAAGACCGGTTCCAATGCAAGGATCCATCTTACAATCATCAAAGCCAGATAGAGAAATATGCAAGATGCTTGAAGGAATTTATAATGACCAATCAGTGCCTTGCCAATGCGGCCATGGTTGTTGTGCTCCAAATAGTAAAAATTTCAAAAGCTCTTTGCTGGGTCCGGAATTCATTGAATTCTCTGAACCCCAATCTTTCCCAAGTTTCGAGTTAGCCGCAATAGCTACAGACATCAGTAACCTTGCTTGGCTTAAAAGCGGATTGGAGAATAGTAGTGTCAAAATGATGGGAGAAACAGCTAGCAGAGTAGTTTCTAATGGCTCTCAAGTGCATATTGGTCATTAG 1116 0.4803 MDPPEETATTTLDHEAASTGTDAAADTGSGDDVAEAGGSGGATGGGSGSNRDRVKGPWSPEEDAILSRLVSKFGARNWSLIARGINGRSGKSCRLRWCNQLDPAVKRKPFTDEEDHIIVSAHAIHGNKWAAIARLLPGRTDNAIKNHWNSTLRRRGVEHDKIKVESSNMVEDVSLDKAKASSEETLSCDVNSLRSSEGRDVSSAEPMDDKYEEKSLTEGQLYHEVKDPPTLFRPKARISAFSVYHTFDGFQPSTSIQRPVPMQGSILQSSKPDREICKMLEGIYNDQSVPCQCGHGCCAPNSKNFKSSLLGPEFIEFSEPQSFPSFELAAIATDISNLAWLKSGLENSSVKMMGETASRVVSNGSQVHIGH 371
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc181254g00030 371 SUPERFAMILY Homeodomain-like 52 148 IPR009057 -
Stsc181254g00030 371 SMART sant 54 103 IPR001005 -
Stsc181254g00030 371 SMART sant 106 154 IPR001005 -
Stsc181254g00030 371 PANTHER MYB PROTEIN-RELATED 55 191 - -
Stsc181254g00030 371 MobiDBLite consensus disorder prediction 1 59 - -
Stsc181254g00030 371 MobiDBLite consensus disorder prediction 201 215 - -
Stsc181254g00030 371 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 106 156 IPR017930 -
Stsc181254g00030 371 Gene3D - 108 179 - -
Stsc181254g00030 371 FunFam Transcription factor MYB44 109 155 - -
Stsc181254g00030 371 MobiDBLite consensus disorder prediction 186 215 - -
Stsc181254g00030 371 MobiDBLite consensus disorder prediction 11 25 - -
Stsc181254g00030 371 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 50 105 IPR017930 -
Stsc181254g00030 371 CDD SANT 57 99 IPR001005 -
Stsc181254g00030 371 Gene3D - 54 106 - -
Stsc181254g00030 371 FunFam MYB transcription factor 55 106 - -
Stsc181254g00030 371 ProSiteProfiles Myb-like domain profile. 50 101 IPR001005 -
Stsc181254g00030 371 ProSiteProfiles Myb-like domain profile. 102 152 IPR001005 -
Stsc181254g00030 371 CDD SANT 109 152 IPR001005 -
Stsc181254g00030 371 Pfam Myb-like DNA-binding domain 58 115 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc181254g00030 Stsc-Chr181254 223933 227198 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc181254g00030 36 371 MYB Transcription Factor Family AT3G09230 51.437 1.69e-108 322
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Stsc181254g00030 Myb_DNA-bind_6 5.3e-16 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc181254g00030 K09422 - gmx:100811740 548.51