Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc181254g00006 ATGGCAAACCATGTTACAAGTACATGTACAACAACACCATCCTCGTTTTTCATATACGATGTTTTTCTGAGTTTTAGAGGGCACACAAGGTACGGTTTCACAGATTGTCTCTATCGCGCGTTGACCAACAAAAGAATCAAGACGTTCAGGGATCGTGACAACCTGAAAACTGGTGATGAAATTGGACACGCTGTTCTTGAAGCAATTGAAAAATCAAGGATTTCAATTGTTGTGCTATGTCGAAACTATGCATCTTCCACGTGGTGCCTGGATGAAGTAGCCAAGATCATGGAGTGTGCGAAGGAGGAGAAGAAGGGAAGAAGAAGAGTTTTGCCAGTCTTTTACAAAGTAGAACCATCGGATGTGCGCCTTCAGAAGAATGAATATGAAGCAGCAATGATGAAGCATGAAAATGGCAGAAACTCACTCAAGGTGGAAGCATGGAGGTCGGCTTTGTCTTCAATAGCCAACCTCACTGGACAACATTGTACTGCGGACATGTATGAAGGTGACATTATTGACAAAATTGTTGAAGAGGTGTTACGAAACCTTCCTCCTGAACCTCTCCTTATTCATAGCCTTGCTGAATTTGATTCTCAATTAGAACAAGTGAAATCTCTTTTAGACGTTGAATCTAGTGATACTCTTTGCATGTTGGGAATTATTTATGGAGATGGTGAAACAATAAGTAAAACAAGGTTTATTGTGGAGCTATATAACAAAATCAGGCATCAATTTGAAGCTGCTAGTTTTCTTGCCAATGTCAGTGAAAAATCAAAGGAAAGTGTTAGTGGTCTAACAGATCTCCAGAAGACACTTTTATTTGAGATGGGCGAGGAAGCAACATTCTTGATAGGTAGCACATTTAAGGGATCCTCTGAAATTAAACGAAGGTTAGGACATAAAAGAGTTCTTCTAGTTCTAGATGATGTTGATGATGATGTGCAACAATTACATACATTGGTAGGAGGGGGTGACTGGTTTGGTCTTGGTAGCAGGATAATCATCACAACAAGAGATGAAAATTTGGTCAATAAGCATGTGTTGGATGGTGTTGACATTAAGAAATACTGCATCCGAAGAGGCGAATTCAAAACCATGGAAGATGCTAAACCAAATCATAGACAAAAAAGGGATGAAGAGGAAGGGGATTTGATAGTAGGATTTGAGAATAACTTGAGCACTATTATTAAGCAGCTTAAGGAAAATGATCTACCTACCAATGTTGTTTCCATAATTGGTATGGGTGGTTTAGGTAAGACGACCATTGCTAGAAAGATCTATGATGACTATGAGGTCAAGAAGTTCTTCACTTGCCGCGCATGGAGCTGTGTTTCTAAGAACTATGTAGCAAGGGAAGTTCTGTTGAGCCTTGTCCATTGTCTGAACAAACCCGCGTCTGAATTTGAAAACTCGAGAGAGGAGGATATAAGGGAGGAACTGAGAGAATATATGAAGCAGCAAAAGTATTTGGTAGTTCTTGATGATCTTTGGGATCCTCTTGTGTGGGATGACATAAAACGTGCACTTCCAAATGGCAAGACTGGTAGCAGAATACTTATAACGAGTCGTAACAATGAGGTGGCGAACTACACAAGCCCAAGGCCTCCCCATTACCTTCCATTCCTAAATGATGAAGAAAGTTGGGAACTGTTCTGTAACAAAGTGTTTTGGGGTAGAAAATGCCCTTCTGATCTAGAGCCTATTGGTAAATCAATGGTTGAAAGGTGTGGAGGCTTACCAATTGCTATAATCACTTTAGCAGCACTTGTTTCTAAGAAGAAAAGGTCACAAAGAGAGTGGTTGCATGTGAAAGGGCATGTCAATTGGCATCTTGCTCAGGATAATACAAAAGTTAAGGATGCATTGAAGCTCAGCTATGACGATTTGCCTGCAAGATTGAAGCCGTGTTTTCTGTATTTCGGGATCTTTCCTGAGGATTATAATATCTCTGCTAGGAAGTTGGTCCAGTTATGGATGGCCGAAGGATTCATTCAACTGGAAGAATGTGGAATACCATATGCGCCGGAACCAGAAGACATCGGCGATGAATACTTAGATGAGCTGGTGGATCGTTGCTTGGTACAAGTGACAAAGAGGAGGAGTGACGGCGGTGTCAAATATTGTCAAATCCATGATCTCTTGCATGACTTTTGCATATCAAAGAGCAAAGTTGATAAGTTTCTAGAGATTTGTACAGAGTCCAATATTCATTCCTTGAGCAATCCTCGAAGGTTGTCCTTTCTTGAAGGTGTCTTGCCAGATTCTCTTAATTGTGCCACCACGGAGTTTCCACAGCTTCAAGTGTTTGTCATGAATGAGGTTTGTGTCAAAAGGTGGAGATTGGAGAAAGGTGCAATGCCTCGGCTTCGACGTTTAGTCGTCCATGGATGTTTTTCCCTTAAACAAGTGCATGTTGTTGATCCATCTCATGAATTGAAAACCACACTCGAAATTGGGCTTATGGCAGATTGCAATTTTGTGATTCATAATTGA 2496 0.4079 MANHVTSTCTTTPSSFFIYDVFLSFRGHTRYGFTDCLYRALTNKRIKTFRDRDNLKTGDEIGHAVLEAIEKSRISIVVLCRNYASSTWCLDEVAKIMECAKEEKKGRRRVLPVFYKVEPSDVRLQKNEYEAAMMKHENGRNSLKVEAWRSALSSIANLTGQHCTADMYEGDIIDKIVEEVLRNLPPEPLLIHSLAEFDSQLEQVKSLLDVESSDTLCMLGIIYGDGETISKTRFIVELYNKIRHQFEAASFLANVSEKSKESVSGLTDLQKTLLFEMGEEATFLIGSTFKGSSEIKRRLGHKRVLLVLDDVDDDVQQLHTLVGGGDWFGLGSRIIITTRDENLVNKHVLDGVDIKKYCIRRGEFKTMEDAKPNHRQKRDEEEGDLIVGFENNLSTIIKQLKENDLPTNVVSIIGMGGLGKTTIARKIYDDYEVKKFFTCRAWSCVSKNYVAREVLLSLVHCLNKPASEFENSREEDIREELREYMKQQKYLVVLDDLWDPLVWDDIKRALPNGKTGSRILITSRNNEVANYTSPRPPHYLPFLNDEESWELFCNKVFWGRKCPSDLEPIGKSMVERCGGLPIAIITLAALVSKKKRSQREWLHVKGHVNWHLAQDNTKVKDALKLSYDDLPARLKPCFLYFGIFPEDYNISARKLVQLWMAEGFIQLEECGIPYAPEPEDIGDEYLDELVDRCLVQVTKRRSDGGVKYCQIHDLLHDFCISKSKVDKFLEICTESNIHSLSNPRRLSFLEGVLPDSLNCATTEFPQLQVFVMNEVCVKRWRLEKGAMPRLRRLVVHGCFSLKQVHVVDPSHELKTTLEIGLMADCNFVIHN 831
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc181254g00006 831 SUPERFAMILY Toll/Interleukin receptor TIR domain 13 160 IPR035897 -
Stsc181254g00006 831 SMART till_3 18 158 IPR000157 GO:0007165
Stsc181254g00006 831 FunFam Disease resistance protein (TIR-NBS-LRR class) 17 185 - -
Stsc181254g00006 831 Gene3D - 183 350 IPR027417 -
Stsc181254g00006 831 ProSiteProfiles TIR domain profile. 17 184 IPR000157 GO:0007165
Stsc181254g00006 831 Gene3D - 18 182 IPR035897 -
Stsc181254g00006 831 PANTHER LEUCINE-RICH REPEAT-CONTAINING PROTEIN 19 344 IPR044974 GO:0006952
Stsc181254g00006 831 Pfam NB-ARC domain 391 628 IPR002182 GO:0043531
Stsc181254g00006 831 Pfam NB-ARC domain 200 349 IPR002182 GO:0043531
Stsc181254g00006 831 Gene3D - 542 631 IPR042197 -
Stsc181254g00006 831 FunFam Probable disease resistance protein At1g63360 627 721 - -
Stsc181254g00006 831 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 187 358 IPR027417 -
Stsc181254g00006 831 FunFam Probable disease resistance protein At1g61300 369 535 - -
Stsc181254g00006 831 Gene3D - 369 534 IPR027417 -
Stsc181254g00006 831 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 384 641 IPR027417 -
Stsc181254g00006 831 PRINTS Disease resistance protein signature 577 591 - -
Stsc181254g00006 831 PRINTS Disease resistance protein signature 484 498 - -
Stsc181254g00006 831 PRINTS Disease resistance protein signature 785 801 - -
Stsc181254g00006 831 PRINTS Disease resistance protein signature 409 424 - -
Stsc181254g00006 831 Gene3D - 632 722 IPR036388 -
Stsc181254g00006 831 Pfam TIR domain 19 184 IPR000157 GO:0007165
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc181254g00006 Stsc-Chr181254 45170 49099 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc181254g00006 66 340 WRKY Transcription Factor Family AT4G12020 30.545 1.40e-21 99.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc181254g00006 - - aip:107625624 1238.4