Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc181253g00027 ATGGAGGATGGAAAGCATAAATCAAGGAGAGAAGATTCTGAAGTGAAGGAAGATGATTCCAAGAGGAGCCACCGTGACAGGGGCGTGGAAAAGGATAAGGATAGAAGCAATGGGAAGCATAGGGATAGGGAGAAGAGGGACCGCGACAGCAGGCGGCATGATAGAGATCATAGTAGTGATGATTCTGATGACAAGTATGATAGGGAGAGGGAGAAGGAGAAGGAGAAGCGCAGAGGTAAAGACAAGGAAGAAAGAAGAGCTCGTGAGAAGAAAAGAGAAAGGGAAAGGGAGAAGGAAAGGGAAAGGGAAGATAAGGAGAGGGAAAGGAGAGAAAGGGCCAAGGAGAAAGAAAGAGAGAGGGAAAGAGAACGAGAAAGGAGGGAGAGGGAGAGGGAACGTGAGCGAGAAAAGGATAAGGATAGGAGGGAGCGTGAGAGAGATAAAGAAATTGAAAGAGAAAGGGGGAGGAGAGTGCGTGACAGAGAGAAGCGCAGGGAAGTGGATAGTGATTATAGTGATGATGATTCCAGGGAGAGGGAGAGAGATAGGAAGCGGCACAAGAAAGAGGATGATGATTACAAGGGGAGAGACAAGGAGAGGAGTTCTGGCAAGTCACATAAGCAAACTGAAGATGTTGAAGTTAGCCCGAGAAGAAAGAGCGGTGAAGATGACTCAGATGCCAAGGTGAAGGAGAGAAAACCTACCCATGAAGAGGAGATAGAGGAAGAACATAAGAGGCTGGATGAAGAAATGGAAAAGAGGAGGAGGAGAGTTCAGGAGTGGCAAGAGCTGAGGAGGAAGAAGGAAGAAGCTGAGAGAGAAAAACAGGGTGAAGCAAGTGCTAGTGAACCAAAGTTGGGAAAGGCCTGGACCCTTGAAGGGGAATCTGATGATGAAGAAGCAACTGGTACAGGGAAGCCAGATACTCCAATGGATGTAGATGAAGATGAAAAACCTGTTGATAAAGAACCTGGGGATCCAATGGTGGCAGATGGTGATAATGGGGCAGTTACATCTGATTTACAAGATGGAACTGCTGGTGCTCCTGAGGACGATGAAATTGATCCACTTGATGGTCGTAGTGGACAGTCAAGGAAAGTTTCCAATAATAAATCTATTGGAAGAATAATTCCTGGTGAAGACTCTGACTCTGATTATTCAGATCTTCAAGTTGACGATGAAGACATTGAAGAAAATGATGAGGAGTTTATGAAAAGAGTGAAGAAGTCAAAAGCCGATAAGTTGTCTATAGTTGACCATTCAAAGATTGATTATCAACCTTTCAAGAAAAATTTCTACATTGAAGTGAAGGATATCTCAAGGTTGACACCTGAAGAAGTTGCTGCCTACCGGAAGGAGCTGGAGTTGAAGATACATGGAAAGGATGTTCCAAAGCCTGTAAAATCATGGCATCAGACTGGACTTACTAGCAAAATTTTAGAGACAATAAGAAAGCTTAACTATGAAAAGCCGATGCCTATTCAAGCTCAGGCACTGCCTGTAATAATGAGTGGTCGAGACTGCATAGGCATTGCTAAAACTGGATCAGGCAAAACACTTGCTTTTGTTTTGCCTATGTTGAGACACATCAAGGATCAGCCACCAGTTGTTACCGGAGATGGACCAATTGGGCTTATCATGGCTCCTACAAGGGAGCTTGTTCAACAGATTTACAGTGATATAAAGAAGTTTGGAAAGGTACTGGGTCTAAGATGTGTACCTGTGTACGGAGGTTCTGGTGTTGCTCAACAAATTAGTGAGTTGAAACGTGGAGCTGAGATAGTGGTTTGTACTCCAGGTAGGATGATTGACATACTATGTACCAGTGGTGGCAAAATAACTAACCTGCGCAGGGTTGAAGTTCTTGCCCGCAAGGTTCTAAATAAACCTGTTGAAATACAAGTTGGTGGCAGAAGTGTTGTGAACAAGGACATAACACAGTTGGTGGAGTTGAGACCAGAAAAAGAAAGGTTTCATAGACTCTTAGAGATATTGGGTGAATGGTATGAGAAAGGAAAGATTTTGATATTTGTCCAGTCACAGGAAAAATGTGATGCTTTGTTCAAGGACTTGCTTAAGTCTGGTTATCCTTGCTTATCACTTCATGGAGCTAAGGACCAGACAGATCGTGAATCCACAATTGCTGATTTTAAAAGCAATGTCTGCAATATGTTGATTGCTACTAGTATTGCTGCCAGGGGACTAGATGTCAAGGAGCTTGAATTGGTTATCAATTTTGATGTTCCTAACCACTATGAAGATTATGTACATCGTGTTGGCCGCACTGGCCGAGCTGGCCGAAAGGGTTGCGCTATTACTTTTATTTCGGAGGGAGAAGCAAGATATGCACCTGATTTGGCAAAAGCATTGGAGCTATCTGAGCAAGTTGTTCCTGATGACTTGAAAGCTCTTGCTGATGGCTTTATGGCCAAAGTGAAACAAGGGCTTGAGCAGGCGCATGGAACTGGTTATGGAGGCAGTGGCTTTAAATTTAATGAAGAGGAAGATGAGGAGAGGAGAGCAGCGAAGAAAGCTCAAGCCAAGGGGTATGGGTTTGAAGAGGACAAATCAGATTCTGAAGATGAAGATGAAAATATTAGGAAGTCGGGAGGTGACATCTCGCAGCTTGCTCAAATTCTTGGTGCCTCAAAAGGAACTGTTCCCGCAATACCTAGTCCCATCTCTACTGCTCAGCTGATTTCTAATGGTGGCCTAAATGTTCCGTTGCAAGCTGTTCTTGGTAATCTCCAAACTACTACGGTTTTGCCTATTGGAGGGCTCCCCCTTACTACAAATGATGGGGCAGCTCGGGCAGCATTAGCTGCTATTAACCTGCAGCACAACTTAGCTAAGATACAGAATGAAGCATTGCCTGAGCATTATGAAGCTGAATTAGAGATAAATGATTTCCCCCAAAATGCTCGGTGGAAAGTCACTCACAAGGAAACTTTGGGTCCAATTTCTGAGTGGACAGGAGCTGCTATTACCACCAGGGGACAATATTTCCCACCTGGTAAAATTGCGGGACCTGGGGAACGCAAGCTCTACTTGTTCATTGAGGGTCCTAGTGAGCAGTCTGTTAAGAGAGCTAAAGCGGAGTTGAAGTCTGTTTTAGAAGACATCACAAACCAAGCTTTGCAACTTCCTGGTGGATCCCAACCTGGGAAATATTCTGTTGTTTAA 3183 0.442 MEDGKHKSRREDSEVKEDDSKRSHRDRGVEKDKDRSNGKHRDREKRDRDSRRHDRDHSSDDSDDKYDREREKEKEKRRGKDKEERRAREKKREREREKEREREDKERERRERAKEKERERERERERREREREREREKDKDRRERERDKEIERERGRRVRDREKRREVDSDYSDDDSRERERDRKRHKKEDDDYKGRDKERSSGKSHKQTEDVEVSPRRKSGEDDSDAKVKERKPTHEEEIEEEHKRLDEEMEKRRRRVQEWQELRRKKEEAEREKQGEASASEPKLGKAWTLEGESDDEEATGTGKPDTPMDVDEDEKPVDKEPGDPMVADGDNGAVTSDLQDGTAGAPEDDEIDPLDGRSGQSRKVSNNKSIGRIIPGEDSDSDYSDLQVDDEDIEENDEEFMKRVKKSKADKLSIVDHSKIDYQPFKKNFYIEVKDISRLTPEEVAAYRKELELKIHGKDVPKPVKSWHQTGLTSKILETIRKLNYEKPMPIQAQALPVIMSGRDCIGIAKTGSGKTLAFVLPMLRHIKDQPPVVTGDGPIGLIMAPTRELVQQIYSDIKKFGKVLGLRCVPVYGGSGVAQQISELKRGAEIVVCTPGRMIDILCTSGGKITNLRRVEVLARKVLNKPVEIQVGGRSVVNKDITQLVELRPEKERFHRLLEILGEWYEKGKILIFVQSQEKCDALFKDLLKSGYPCLSLHGAKDQTDRESTIADFKSNVCNMLIATSIAARGLDVKELELVINFDVPNHYEDYVHRVGRTGRAGRKGCAITFISEGEARYAPDLAKALELSEQVVPDDLKALADGFMAKVKQGLEQAHGTGYGGSGFKFNEEEDEERRAAKKAQAKGYGFEEDKSDSEDEDENIRKSGGDISQLAQILGASKGTVPAIPSPISTAQLISNGGLNVPLQAVLGNLQTTTVLPIGGLPLTTNDGAARAALAAINLQHNLAKIQNEALPEHYEAELEINDFPQNARWKVTHKETLGPISEWTGAAITTRGQYFPPGKIAGPGERKLYLFIEGPSEQSVKRAKAELKSVLEDITNQALQLPGGSQPGKYSVV 1060
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc181253g00027 1060 SMART ultradead3 487 648 IPR014001 -
Stsc181253g00027 1060 Pfam Helicase conserved C-terminal domain 658 766 IPR001650 -
Stsc181253g00027 1060 Gene3D - 635 808 IPR027417 -
Stsc181253g00027 1060 PANTHER RNA HELICASE 618 835 - -
Stsc181253g00027 1060 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 499 622 IPR014001 -
Stsc181253g00027 1060 CDD KH-I_AtRH42_like 958 1059 - -
Stsc181253g00027 1060 CDD SF2_C_DEAD 645 775 - -
Stsc181253g00027 1060 SMART helicmild6 685 766 IPR001650 -
Stsc181253g00027 1060 Coils Coil 80 142 - -
Stsc181253g00027 1060 Pfam DEAD/DEAH box helicase 493 621 IPR011545 GO:0003676|GO:0005524
Stsc181253g00027 1060 Gene3D - 431 634 IPR027417 -
Stsc181253g00027 1060 Coils Coil 233 281 - -
Stsc181253g00027 1060 MobiDBLite consensus disorder prediction 1 388 - -
Stsc181253g00027 1060 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 641 800 IPR027417 -
Stsc181253g00027 1060 MobiDBLite consensus disorder prediction 830 868 - -
Stsc181253g00027 1060 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 404 782 IPR027417 -
Stsc181253g00027 1060 MobiDBLite consensus disorder prediction 823 868 - -
Stsc181253g00027 1060 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 644 805 IPR001650 -
Stsc181253g00027 1060 MobiDBLite consensus disorder prediction 1 281 - -
Stsc181253g00027 1060 MobiDBLite consensus disorder prediction 290 328 - -
Stsc181253g00027 1060 ProSiteProfiles DEAD-box RNA helicase Q motif profile. 468 496 IPR014014 GO:0003724
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc181253g00027 Stsc-Chr181253 184738 188651 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc181253g00027 469 804 Eukaryotic Initiation Factors Gene Family AT1G72730 30.526 1.91e-40 153
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc181253g00027 K12811 - gmx:100784306 1328.54