LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Stsc181253g00019	ATGGCTTACATGTGTGCAGACAGTGGAAACCTCATGGCCATTGCACAGCAAGTCATCAAGCAGAAGCAGCAACAAGAGCAACAACAACACAACCACCATAGCCATAACCACCACCTCCTCCACCACCACCACCACCAACAGCAGCATCAGCATCAGCATCAGCATCAGCAGCAGCAGCAGAACCAGCAACACTTACTGGGTATTTCTCCTCTTTCTCTTCATCCATGGAACAATACACCTCCTTTGGGGTTCCCTCTCACACCCACCAATGATTTCTCTGACCCGTTTCAAGTCGGGTCAGGTCCCGATAACCCGGATCCAGGTTTTCACTTCCCTCCTCCTTTGGAGCCTCATTCTTCTTCTTCCTTCAGGTTCTCTGATTTTGCCGCCGCTACTTTTGATTCCGATGAGTGGATGGACACACTCATGGCAACCGCTGCCGGAGATTCGACGGACGCGTCAACCATCCCGGCGGCGTGGCACAACGGTAATTCCGATTTCGGACTTTACGGTTCTAGCCCGTTTAATACTTGTCCGACCCGTTTGTCACCGACTTCGGATCTCAACAGAGTGATATTCTCGTCGGAACCTCACACCGCCGCCGTGACAACCACCGCGGTGGCAGATACCGGTGTATCTATCCAACAGGGTCAGCTTCCGGCCACGTGGGCAACCCCTCCGCCGCTTCCTCCGCCAACCGCCATCAAAGAGCCTCCGAAAATTACACCGTCTTCTCCGCCGGCACCACCGCAAGCTCCGGCGACAGTCCAAGGCGGGTTGTTGAGCTTGCCTGAGCCTGATTCATCGCACCCGCTTCTGAAAGCGCTAACAGAGTGCGCTCTGTTTTCGGAAACGGAACCGGATCAAGCTTCAGAGTCTCTGAGCCAGTTGAGAAAATCGGTGTCCCAAAACGGAAATCCAATCCAAAGAGTTTCCTTTTACTTCGCCGAAGCTTTAACCCGAAAATTATCATTTCAAATGGAGAAAGATAAGAACTTGGCAATGGTGGAAGCTGCTTCCACAGCCACTACTTCTGAGGAGCTAACAGTGTGTTACAAGGCTTTGAATGATGCTTGCCNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTAG	1206	0.4693	MAYMCADSGNLMAIAQQVIKQKQQQEQQQHNHHSHNHHLLHHHHHQQQHQHQHQHQQQQQNQQHLLGISPLSLHPWNNTPPLGFPLTPTNDFSDPFQVGSGPDNPDPGFHFPPPLEPHSSSSFRFSDFAAATFDSDEWMDTLMATAAGDSTDASTIPAAWHNGNSDFGLYGSSPFNTCPTRLSPTSDLNRVIFSSEPHTAAVTTTAVADTGVSIQQGQLPATWATPPPLPPPTAIKEPPKITPSSPPAPPQAPATVQGGLLSLPEPDSSHPLLKALTECALFSETEPDQASESLSQLRKSVSQNGNPIQRVSFYFAEALTRKLSFQMEKDKNLAMVEAASTATTSEELTVCYKALNDACXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX	401

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Stsc181253g00019	401	MobiDBLite	consensus disorder prediction	219	269	-	-
	Stsc181253g00019	401	MobiDBLite	consensus disorder prediction	52	76	-	-
	Stsc181253g00019	401	ProSiteProfiles	GRAS family profile.	263	401	IPR005202	-
	Stsc181253g00019	401	Pfam	GRAS domain family	273	359	IPR005202	-
	Stsc181253g00019	401	Coils	Coil	352	359	-	-
	Stsc181253g00019	401	MobiDBLite	consensus disorder prediction	34	51	-	-
	Stsc181253g00019	401	MobiDBLite	consensus disorder prediction	83	97	-	-
	Stsc181253g00019	401	MobiDBLite	consensus disorder prediction	223	253	-	-
	Stsc181253g00019	401	MobiDBLite	consensus disorder prediction	16	117	-	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Stsc181253g00019	Stsc-Chr181253	98367	100869	Dispersed

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Stsc181253g00019	1	359	GRAS Transcription Factor Family	AT5G66770	37.057	5.32e-45	162

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	TF	GRAS	Stsc181253g00019		GRAS	5.8e-09	CL0063

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Stsc181253g00019	-		-	adu:107477343	496.123