Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc181253g00018 ATGGGAATGCGACCCCGTAAATCGGGTGAGGAGGGACAAGAGGAGGAGGAAGAGGAAGAGGAGGAGCTGCCGGGCGGTGGAACCACGGGCTCGGGACAATCGGGGTCGACTAGTAAGAGTGCTGGGGTGGCAACGCCAGCTGGTGATAACACCTGTCTCAAATTAGACCATCTTGACATACAAGGCGATGATGCTGGATCGCAGGGAGCTGTTGGTAGCAAGAAGAAGAAGAGAGGTCAACGGGCAGTTGGACCTGATAAAAGTGGAAGAGGGCTCCGTCAATTTAGTATGAAAGTTTGTGAGAAGGTAGAAAGCAAGGGAAGAACAACTTATAATGAGGTAGCAGATGAACTTGTGGCTGAATTTGCTGATCCAGTCAATAGTGGTTTGTCTCCTGATCAGCAACAATACGATGAGAAAAATATTCGTAGAAGGGTATATGATGCTCTAAACGTTCTCATGGCAATGGATATTATTTCGAAGGATAAAAAGGAAATACAATGGAGAGGTCTTCCTCGTACTAATGTGAACGATATTGAAGAACTAAAGACAGAACGTCTTGCGCTCAGGAGTAAAATTGAGAAGAAAACAGCATATTTGCAAGAGCTGGAGGAGCAATTTGTAGGCATTCAGAACCTTATAAAACGAAATGAGCAATTATATAGTTCAGAAAACCCTCCCGGTGGTGTATCTTTACCTTTTATTCTGGTGCAGACACGTCCTCATGCAACTGTTGAAGTGGAAATATCAGAAGATATGCAGCTTGTGCATTTTGATTTCAATAGTACTCCTTTTGAGCTGCACGACGACAACTATGTGCTGAAGGCAATGAAATTCTGTGGGAGACCACCGAGTGATAATACGACACACAATCTTGCTGATGGAGGTGAAGGTTCTAGCATGTCAGGATTGAACCAGTCACAAGTTCCTCCTTCAGTTACGAATCTTCCAGTTAGGCCCCCCACATCACCTCCACTCCCTGGGATATTGAAGGCAAGAGTTAAGAATGAGCCGTAA 1017 0.4503 MGMRPRKSGEEGQEEEEEEEEELPGGGTTGSGQSGSTSKSAGVATPAGDNTCLKLDHLDIQGDDAGSQGAVGSKKKKRGQRAVGPDKSGRGLRQFSMKVCEKVESKGRTTYNEVADELVAEFADPVNSGLSPDQQQYDEKNIRRRVYDALNVLMAMDIISKDKKEIQWRGLPRTNVNDIEELKTERLALRSKIEKKTAYLQELEEQFVGIQNLIKRNEQLYSSENPPGGVSLPFILVQTRPHATVEVEISEDMQLVHFDFNSTPFELHDDNYVLKAMKFCGRPPSDNTTHNLADGGEGSSMSGLNQSQVPPSVTNLPVRPPTSPPLPGILKARVKNEP 338
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc181253g00018 338 Pfam Transcription factor DP 178 287 IPR014889 -
Stsc181253g00018 338 MobiDBLite consensus disorder prediction 285 313 - -
Stsc181253g00018 338 MobiDBLite consensus disorder prediction 1 91 - -
Stsc181253g00018 338 Gene3D Transcription factor DP 176 295 IPR038168 -
Stsc181253g00018 338 MobiDBLite consensus disorder prediction 285 338 - -
Stsc181253g00018 338 FunFam Transcription factor-like protein DPB 176 299 - -
Stsc181253g00018 338 Coils Coil 186 220 - -
Stsc181253g00018 338 CDD DP_DD 175 277 IPR014889 -
Stsc181253g00018 338 SUPERFAMILY E2F-DP heterodimerization region 177 290 IPR037241 -
Stsc181253g00018 338 FunFam Transcription factor-like protein DPB 82 175 - -
Stsc181253g00018 338 SMART DP_2 177 336 IPR014889 -
Stsc181253g00018 338 Gene3D - 83 175 IPR036388 -
Stsc181253g00018 338 PANTHER TRANSCRIPTION FACTOR DP 29 291 IPR015648 GO:0005667|GO:0051726
Stsc181253g00018 338 MobiDBLite consensus disorder prediction 27 45 - -
Stsc181253g00018 338 SMART E2F_TDP_2 87 170 IPR003316 GO:0005667|GO:0006355
Stsc181253g00018 338 Pfam E2F/DP family winged-helix DNA-binding domain 90 170 IPR003316 GO:0005667|GO:0006355
Stsc181253g00018 338 PIRSF Txn_factor_DP 6 338 IPR015648 GO:0005667|GO:0051726
Stsc181253g00018 338 SUPERFAMILY "Winged helix" DNA-binding domain 90 171 IPR036390 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc181253g00018 Stsc-Chr181253 78039 81865 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc181253g00018 71 278 E2F-DP Transcription Factor Family AT5G02470 53.333 6.23e-76 233
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF E2F-DP Stsc181253g00018 DP 4.3e-39 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc181253g00018 K04683 - jre:108988357 506.523