Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc181253g00014 ATGAAAACAAGTTCTGACACCAGCAAGGACATGTTAGAAGCTCTTCTTAACATTTCTCAAGAGAATAGCAAAGAGATAAACAAAATAAATATTGAACATTTAATGCTGACTTTATTTGTTGCCGGAACTGATACAATCACATCTACATTAGAATGGGCGATGACAGAATTACTCAGCAATCCAAATACCATGGCAAAGGCTAAAAGGGAGCTTGAAGAAACCATTGGAAAGGGAAACCAAGTTGAGGAATCAGACATAGCAAGATTACCATATTTACAAGCAATATTGAAGGAGACATTTCGTTTGCACCCTTCAGTGCCATTTTTGCTCCCAAGAAGAGCTGACACTGATGTAGAAATCAATGGCTATACCATACCAAAAGGTTCACAGTTGCTAATCAATGTTTATGCTATTGGAAGGGATTCAAATGTGTGGAAGAATGACACAAATTTGTTTTCACCAGAGAGGTTCTTGGGATTAGAAACTGATGTTAGAGGGAGGCATTTTGAGTTGATGCCATTTGGTGGTGGTAGAAGAATATGTCCTGGTTTAACATATGCTCTGAGGATTTTGTTCTTGTTGTTAGGTTCATTGGTTAATTGCTTTGATTGGAAGCTTGAAAATGATATGAAGGCTGAGGATATTGATAAGGAAGAAAAATTTGGATTAACATTAAGAAAGGCTAAACCTCTTAGAGCCATTCCAATCAAAGTAAATAACTAA 723 0.3651 MKTSSDTSKDMLEALLNISQENSKEINKINIEHLMLTLFVAGTDTITSTLEWAMTELLSNPNTMAKAKRELEETIGKGNQVEESDIARLPYLQAILKETFRLHPSVPFLLPRRADTDVEINGYTIPKGSQLLINVYAIGRDSNVWKNDTNLFSPERFLGLETDVRGRHFELMPFGGGRRICPGLTYALRILFLLLGSLVNCFDWKLENDMKAEDIDKEEKFGLTLRKAKPLRAIPIKVNN 240
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc181253g00014 240 FunFam Geraniol 8-hydroxylase 1 234 - -
Stsc181253g00014 240 Pfam Cytochrome P450 7 226 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Stsc181253g00014 240 PANTHER CYTOCHROME P450, FAMILY 76, SUBFAMILY C, POLYPEPTIDE 5-RELATED 5 237 - -
Stsc181253g00014 240 ProSitePatterns Cytochrome P450 cysteine heme-iron ligand signature. 174 183 IPR017972 GO:0005506|GO:0016705
Stsc181253g00014 240 Gene3D Cytochrome P450 1 237 IPR036396 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Stsc181253g00014 240 PRINTS E-class P450 group I signature 93 111 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Stsc181253g00014 240 PRINTS E-class P450 group I signature 30 47 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Stsc181253g00014 240 PRINTS E-class P450 group I signature 50 76 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Stsc181253g00014 240 PRINTS E-class P450 group I signature 171 181 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Stsc181253g00014 240 PRINTS E-class P450 group I signature 181 204 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Stsc181253g00014 240 PRINTS P450 superfamily signature 172 181 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Stsc181253g00014 240 PRINTS P450 superfamily signature 41 58 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Stsc181253g00014 240 PRINTS P450 superfamily signature 181 192 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Stsc181253g00014 240 PRINTS P450 superfamily signature 94 105 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Stsc181253g00014 240 SUPERFAMILY Cytochrome P450 5 235 IPR036396 GO:0004497|GO:0005506|GO:0016705|GO:0020037
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc181253g00014 Stsc-Chr181253 67020 67856 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc181253g00014 7 237 Cytochrome P450 AT1G33720 56.710 7.04e-95 281
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc181253g00014 - - ahf:112735734 394.43