Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc181253g00011 ATGCTACCTTCATCAGCAGCAACTTCCATTATTGATGCACAAAAAACCAACTCGAACCAAACAACACACATCTTCAAATCAAAATTACCAGACATACCCATCAACAATACCATTCCTCTCCACACTTATTCCTTTCAAAACCTCCCTCAAGTCTCTCATCGCCCGTGTCTCATCACGGGCGATGGCAAGACGTTCACTTACGGTGATACCCACCGCGCTTCTAGAAGCTTTGCGATGGGCCTATGCAACCTGGGAATCCGCAAAGGCGACGTCATCATGATCCTACTCCCAAACTCTCCAGAATTCGTGTTCTCCTTTTGGGCTGCTTCTATGCTTGGCGCGGTTTCCACCACTGCCAACCCCTCTTATACTTCCGCTGAAATCACAAAGCAACTGAAAGCCTCCAAGGCCAAAATCATCATTACACATGCCATTCACGTGCACAAGCTCAAACAAGAAGAAGAAACCACCTTCATAGTGATAACTGTGGACAACCCGCCAGAGAACTGCATGAGTTTCTCGGCGGTTTCCAACATGGAAGGGAAGTTGCCGGAGGTGGATATTGACCCTGACGACATGGTGACACTGCCATTTTCCTCCGGCACAACGGGGTTGCCGAAGGGAGTGATTCTAACACACAGGAGTCTGATAACAAACGTGGCTCAGACAGTTGATGGAAAGAACCCTAACTTGCACATGAAGGAAGATGACGTAGTGCTTTGTGTCCTACCATTGTTTCACATTTATGCGCTACATTCTGTGATGTTGTGCTCTATGAGAGTAGGGTGTAGGATATTGCTTATGGAGAAGTTCGAGATGAGAGCGTTGTTAGAGCTTGTGGAGAAGCACAGGGTTACGATTGTTATGGCGGTGCCGCCGTTGGTTGCGGCATTGTCAAAGAACCCCATGGTGGAAGAGTATGATCTTAGCTCCATCAGGATGGTGATGTCTGGAGGTGCCTTGCTTAGCAAGGACATCGAGGAGGCTTTTCATAGTAAATTGCCTCAAACAATCCTTGGACAGGCTTTGGGGATGACGGAATCGGGGCCAGTGATAGGGATGCCATTAGGGTTTGCGAAGCATCCGATGACAACGAAATTAGAGTCATGCGGCAGTTTAATTAGAAATGCAGAGATGAAGATCGTTGAGCCTCTTACTGGCTCTTCTCTCCCTTATAATACTTCTGGAGAGATTTGCATTCGAGGTGAACAAATCATGAAAGGATACCTGAATGATGAGAAGGCGACAGCAGAAGCAATTGATGAAGAGGGTTGGCTTCATACTGGTGATATTGGTTATGTGGATAATAATGATGAGATTTTCATTGTTGACAGACTTAAGGAAATCATCAAATTCAAAGGCTATCAGGTGGCTCCGGCTGAACTTGAAGGCCTTCTTAGGAGCCACCATTCAATTGAAGATGCAGCTGTTGTCTCGCAAAAAGATGATGTAGCTGGTGAAGTTCCAGTTGCTTTTGTGGTGAGGTCATCATCAAATAATGGTAATTTTGATCTCATCACTGAAGATGCTATAAAGGACTTTATAGCTAAACAGGTAGTGTTTTACAAGAGGCTAAAGAGAGTAATATTCATTAATGAAATCCCAAAGTCTGCAATTGGCAAGATATTAAGAAAAGAACTCAAAGCAAAGCTCGCTAGCTACTACCACCAGCCTATCTAA 1680 0.4506 MLPSSAATSIIDAQKTNSNQTTHIFKSKLPDIPINNTIPLHTYSFQNLPQVSHRPCLITGDGKTFTYGDTHRASRSFAMGLCNLGIRKGDVIMILLPNSPEFVFSFWAASMLGAVSTTANPSYTSAEITKQLKASKAKIIITHAIHVHKLKQEEETTFIVITVDNPPENCMSFSAVSNMEGKLPEVDIDPDDMVTLPFSSGTTGLPKGVILTHRSLITNVAQTVDGKNPNLHMKEDDVVLCVLPLFHIYALHSVMLCSMRVGCRILLMEKFEMRALLELVEKHRVTIVMAVPPLVAALSKNPMVEEYDLSSIRMVMSGGALLSKDIEEAFHSKLPQTILGQALGMTESGPVIGMPLGFAKHPMTTKLESCGSLIRNAEMKIVEPLTGSSLPYNTSGEICIRGEQIMKGYLNDEKATAEAIDEEGWLHTGDIGYVDNNDEIFIVDRLKEIIKFKGYQVAPAELEGLLRSHHSIEDAAVVSQKDDVAGEVPVAFVVRSSSNNGNFDLITEDAIKDFIAKQVVFYKRLKRVIFINEIPKSAIGKILRKELKAKLASYYHQPI 559
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc181253g00011 559 FunFam 4-coumarate--CoA ligase 2 448 554 - -
Stsc181253g00011 559 SUPERFAMILY Acetyl-CoA synthetase-like 38 553 - -
Stsc181253g00011 559 FunFam Long-chain-fatty-acid--CoA ligase FadD 26 447 - -
Stsc181253g00011 559 ProSitePatterns Putative AMP-binding domain signature. 196 207 IPR020845 -
Stsc181253g00011 559 Pfam AMP-binding enzyme 53 452 IPR000873 -
Stsc181253g00011 559 Pfam AMP-binding enzyme C-terminal domain 461 541 IPR025110 -
Stsc181253g00011 559 Gene3D - 447 554 IPR045851 -
Stsc181253g00011 559 Gene3D - 14 446 IPR042099 -
Stsc181253g00011 559 CDD 4CL 29 547 - -
Stsc181253g00011 559 PANTHER LONG-CHAIN-FATTY-ACID--COA LIGASE 20 549 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc181253g00011 Stsc-Chr181253 49610 53157 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc181253g00011 14 479 Monolignol Biosynthesis Gene Families AT3G21240 57.595 0.0 570
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc181253g00011 K01904 - gmx:547930 708.753