Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc181253g00009 ATGCTACCATCATCCATTGATGCACAAAAAACCAACTCGAACCAAACAACACACATCTTCAAATCAAAATTACCAGACATACCCATCAACAATACCATTCCTCTCCACACTTACGCCTTTCAAAACCTCCCTCAAGTCTCCCACCGCCCGTGTCTCATCACGGGCGATGGCAAGACTTACACCTACGGTGATACCCACCGCGCTTCTAGAAGCTTTGCCATGGGCCTCTTCAATCTCGGAATCCGCAAAGGTGATGTCATCATGATCCTACTCCCAAACTCTCCGGAGTTCGTGTTCTCCTTTTGGGCTGCTTCCATGCTTGGTGCAGTTTCCACCGTTGCCAACCCTTCATACACTTTCGCTGAAATCATGAAGCAGCTCAAAGCCACCAATTCCAAAATCGTCATTACACGTGCCATGCACGTGCACAAGCTCAAACAAGAGGAGAAAAACACCTTCATAGTCATAACTGTGGATAACCCACCAGAGAACTGCATGAGTTTCTCGGTGGTTTCCAGAACGGAAGGGACGCTACCGGAGGTAGATATTGACCCTGACGATGCGGTGACACTGCCATTTTCCTCCGGCACGACGGGCTCGCCAAAGGGTGTGGTTCTAACACACAAGAGCCTAATAACAAACATGGCTCAACTGGTTGATGGAGAAAACCCTAACTTGCACATGAAGGAAGAGGATGTAGTTCTTTGCGTCCTACCGTTGTTTCACATTTTCGCGCTACACTGTGTGATGTTGTGCTCTACGAGAGTAGGGTGTACGGTATTGCTTATGGAGAAGTTTGAGATGAGGGCGTTGTTGGAGCTTGTAGAGAAGCACAGGGTTTCGGTTGTGATGGCGGTGCCGCCGTTGGTGGTGGCACTGTCAAAGAACCCTGAGGTGGAGGAGTATGAACTTAGCTCCATCCGGATGGTGTTGTCCGGAGGTGCCCCACTTGCAAAGAACATTGATAAGGCTTTTCATAGCAGGTTTCCTCAAGCAATTCTTCGACAGGGTTTAGGAATGACAGAGTCGGGGCCAGTGATATCGATGTCATTAGGATTTGCAAAGTATCCGATGACAACCAAGTTAGAATCATGTGGCAGTGTTGTTAGAAATACAGAGATGAAGATTATTGACCCTCTAACTGGTTCTTCTCTCCCTTATAATACTTCGGGTGAAATTTGCATTCGAGGTCAACAAATTATGAAAGGATACCTGAATGATGAGAAGGCGACAGCAGAAGCAATTGATGAAGAGGGTTGGCTTCATACTGGTGATGTTGGTTATGTGGATAATAACGATGAGATTTTCATTGTTGATAGACTTAAGGAACTCATCAAATTCAAAGCTTTCCAGGTGGCTCCGGCAGAACTTGAAGGCCTTTTGAGGAGCCATCCTTCCATTGAAGATGCAGCTGTTGTCCCGCAAAAAGATGATGTAGCTGGTGAAGTTCCAGTTGCTTTTGTGGTAAGGTCATCAACATCAAATAATGGTAATTCTGATCTTATTACTGAAGATGCTGTAAAGGACTTTGTAGCTAAACAGGTAGTGTTTTACAAGAGGCTAAAGAGAATAATATTCGTTGATGAAATCCCAAAGACTGCAATTGGCAAGATATTAAGAAAAGAACTCAAAGCAAAGCTCTAG 1644 0.4538 MLPSSIDAQKTNSNQTTHIFKSKLPDIPINNTIPLHTYAFQNLPQVSHRPCLITGDGKTYTYGDTHRASRSFAMGLFNLGIRKGDVIMILLPNSPEFVFSFWAASMLGAVSTVANPSYTFAEIMKQLKATNSKIVITRAMHVHKLKQEEKNTFIVITVDNPPENCMSFSVVSRTEGTLPEVDIDPDDAVTLPFSSGTTGSPKGVVLTHKSLITNMAQLVDGENPNLHMKEEDVVLCVLPLFHIFALHCVMLCSTRVGCTVLLMEKFEMRALLELVEKHRVSVVMAVPPLVVALSKNPEVEEYELSSIRMVLSGGAPLAKNIDKAFHSRFPQAILRQGLGMTESGPVISMSLGFAKYPMTTKLESCGSVVRNTEMKIIDPLTGSSLPYNTSGEICIRGQQIMKGYLNDEKATAEAIDEEGWLHTGDVGYVDNNDEIFIVDRLKELIKFKAFQVAPAELEGLLRSHPSIEDAAVVPQKDDVAGEVPVAFVVRSSTSNNGNSDLITEDAVKDFVAKQVVFYKRLKRIIFVDEIPKTAIGKILRKELKAKL 547
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc181253g00009 547 FunFam 4-coumarate--CoA ligase 2 443 547 - -
Stsc181253g00009 547 Gene3D - 9 441 IPR042099 -
Stsc181253g00009 547 SUPERFAMILY Acetyl-CoA synthetase-like 33 546 - -
Stsc181253g00009 547 FunFam Long-chain-fatty-acid--CoA ligase FadD 21 442 - -
Stsc181253g00009 547 ProSitePatterns Putative AMP-binding domain signature. 191 202 IPR020845 -
Stsc181253g00009 547 Gene3D - 442 547 IPR045851 -
Stsc181253g00009 547 PANTHER LONG-CHAIN-FATTY-ACID--COA LIGASE 15 545 - -
Stsc181253g00009 547 Pfam AMP-binding enzyme C-terminal domain 456 537 IPR025110 -
Stsc181253g00009 547 CDD 4CL 24 543 - -
Stsc181253g00009 547 Pfam AMP-binding enzyme 48 447 IPR000873 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc181253g00009 Stsc-Chr181253 38065 41442 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc181253g00009 9 473 Monolignol Biosynthesis Gene Families AT3G21240 58.051 0.0 573
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc181253g00009 K01904 - gmx:547930 703.745