Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc181252g00043 ATGGTGCAATCAAGAAAGTTCAGAGGTGTCAGGCAGCGTCATTGGGGTTCTTGGGTTTCCGAGATTCGCCACCCACTCTTGAAGAGGAGGGTTTGGTTAGGCACATTTGAGACTGCCGAAGAAGCTGCAAGAGCCTATGATCAAGCTGCCATTTTGATGAGTGGAAGAAATGCAAAGACCAATTTCCCCATCATGCACACACCGGACGGTGATCCCAAGCCTGAGGACGCGCCGCCGCCGCCTTCTTCCGCCGCCAACAAGGATCTAGAGGAGATTCTACACGCCAAGCTTCGAAAATGCGGCAAGGTTCCTTCACCTTCCATGACATGCTTGAGGCTCGACACCGAGAATTCCCACATTGGTGTGTGGCAGAAGCGCGCTGGCCAGCGTTCTGATTCCAATTGGGTTATGAGGGTTCAGCTCGGCGCTGGAAACAACAAAAGTGGTGGTTGTGGTGGTGGTGGTGGTGGTGGGATGAGTAATTCTTCTTCAATGGCGGGTTCTTCTTCTTCTTCTTGTGATGTTCTTCAGTCTCCGTCGTCGTCGACCGTATCGGGTGGCGGTGGTGTTAGGGGAGAGATGGATGAGGAAGAGAGAATAGCATTGCAGATGATTGAAGAGCTTCTCAACAGAAACTGTCCAAGTCCATCGTCATTCATCGCCAACAACTTGGATCACCATGATCAAAGGGGTGGTCACGGTGAAGATGATGATAATGCTACCTTCTTTCTTTGA 735 0.5102 MVQSRKFRGVRQRHWGSWVSEIRHPLLKRRVWLGTFETAEEAARAYDQAAILMSGRNAKTNFPIMHTPDGDPKPEDAPPPPSSAANKDLEEILHAKLRKCGKVPSPSMTCLRLDTENSHIGVWQKRAGQRSDSNWVMRVQLGAGNNKSGGCGGGGGGGMSNSSSMAGSSSSSCDVLQSPSSSTVSGGGGVRGEMDEEERIALQMIEELLNRNCPSPSSFIANNLDHHDQRGGHGEDDDNATFFL 244
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc181252g00043 244 CDD AP2 6 64 IPR001471 GO:0003700|GO:0006355
Stsc181252g00043 244 SMART rav1_2 6 69 IPR001471 GO:0003700|GO:0006355
Stsc181252g00043 244 Gene3D AP2/ERF domain 5 65 IPR036955 GO:0003700|GO:0006355
Stsc181252g00043 244 SUPERFAMILY DNA-binding domain 6 64 IPR016177 GO:0003677
Stsc181252g00043 244 FunFam Ethylene-responsive transcription factor 2 5 64 - -
Stsc181252g00043 244 PRINTS Ethylene responsive element binding protein signature 29 45 IPR001471 GO:0003700|GO:0006355
Stsc181252g00043 244 PRINTS Ethylene responsive element binding protein signature 7 18 IPR001471 GO:0003700|GO:0006355
Stsc181252g00043 244 PANTHER SHN SHINE , DNA BINDING / TRANSCRIPTION FACTOR 3 167 - -
Stsc181252g00043 244 MobiDBLite consensus disorder prediction 144 192 - -
Stsc181252g00043 244 MobiDBLite consensus disorder prediction 65 85 - -
Stsc181252g00043 244 MobiDBLite consensus disorder prediction 157 187 - -
Stsc181252g00043 244 Pfam AP2 domain 6 54 IPR001471 GO:0003700|GO:0006355
Stsc181252g00043 244 MobiDBLite consensus disorder prediction 220 244 - -
Stsc181252g00043 244 ProSiteProfiles AP2/ERF domain profile. 6 63 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc181252g00043 Stsc-Chr181252 252197 253062 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc181252g00043 1 212 AP2-EREBP Transcription Factor Family AT1G15360 58.525 6.14e-78 232
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Stsc181252g00043 AP2 1.4e-12 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc181252g00043 - - adu:107472039 322.783