Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc181252g00041 ATGGCTTCAAACTGCATTCATGTTCTGTTCTTATGGCTGTCCTTTTGTGTGGCCCTGGCAGATAACATTGATATTTTCTTGGATGAAATTATCTCCCCTCCTAACAGTAGCACTGAATACTCATCTTCTTGGGTGTCAAGTTCTGGCCAATTTGAATTCGGCTTTTACCATCACGGTGATGGCTACGCCATTGGAATATGGCTCAAGGGCGGTGATGGAAGCAAGACAGTTGTATGGACTGCTAAACGTGACGACCCTCCAATCTCATCTAACTCCACCTTGGAATTAACCGTGGATGGCCTACTTCTCAAGCAAGGGAGTGATGTCCAAGGACAGGTCTATGTGGATACAGAACCAGCCGGTTCTGCATCCATGCTTGATTCTGGTAACTTTGTGATCTATGCTCAAGAAGGTTCTTCTATTGTGTGGCAAAGCTTTCATCACCCAACTGACACCATATTAGGAGGCCAGAATTTAACTATTCGGAACCAGCTTGTCTCTAGCATCTCCACTTCAGACCGTTCCACTGGACACCACTTTCTTGCCTTTCAGCGTGATGACAACCTTGTTGCTTATCCCATCAATAGCTCCGCTGAGTCTCCTGATGCTTACTGGTCTTCCAACAATCTGTACCAGCAAGAGGTGGAACAGTTGAGCCTTGACACTAAAGGCAACCTTTGCTTCGACGATGCCTTTCAATGCTTGGTTAATAACACTAACCACCAGAACCAGCCGCACAACACTAGTTCTATCTATCGCGCAACTCTTGATGTTGATGGAAACCTGAGATTGTATGAGCACCTATTTGAGGATAAGGAGGGAAGTAATATTACAAATCTGTGGCAAGCCTTGAGTGATGAATGCCAAATCAAGGGGTTTTGTGGCATCAACAGTTACTGCTCCAACACAAGCGGCACTGCTAGATGCCAGTGTTATCCTGGTTTCATCCCCTCCAACAACCACACCACTGGTAGTAATGCCATGTTTCTGGAGTGCAAACTGAACTACAGCAAAGATGATTGCGAAACAAGTGGTGACCGAAACTTTTTGTTGTATAACATTGTTTCTTTGGAGGAGATGCAGTGGGATGGGTACCCATATTGGGCTAAACCAATGAGCATGAGAGCTTGTGACAAGTCTTGCAAGACAGATTGTGATTGTGGAGCAGCATTATACACAAATGGCCAATGCAGCAAATATAGTCTTCCACTCAGATATGGCAGAAAGGCTCCAAATGAATCAGACACAGGCATGGCACTCTTCAAGGTGCCTTCCGGATATGTCATCAGGGGAAACACTACCACCTCATCTCCCAAGAATCCTAATGCCATTGTTAATAACCGGAAAGGTCTGATACTCATTCTAGCCTCTACTTTGGGTTCCATTTCATTTCTCTGTGTGCTCTTTGTTGTGTCTATTTTCTTCACTTATAGGAGCCAAGTTCATAGATTTACAAAGCTGTCTGCCAGTTCCAATCTGGGATTCACTGAGGAATGTTCGTTACGCTCGTTTTCCTTTGATGAACTTGTGAAAGCAACTAGCGGGTTCACAGAGGAGGTAGGCAGAGGATCTTTCGGAGCAGTTTATAGAGGCACAATTGGAGAGAATAACAGAAGGATTGCTGTCAAGCGAATGGAGAAGATTGCTGACGAAGGAGAGAGGGAATTTAGAGCTGAAATTACTGCCATTGCTCGAACTCATCATAGGAATCTGGTTAAGCTCCTGGGCTTTTGTATTGAGGGGTCAAGGAAGCTTCTTGTTTATGAATATGTCAGCAATGGATCTCTGGCGAATCTTCTCTTCAAGACTAAGAAGCATCTACCATTGAAAGAGAGACTGAAAATTGCATTGGATGTGGCCAGAGGAGTCCAGTATCTACATGAAGAGTGTGAAGTTTGTATTATCCATTGTAATCTGAAGCCTCAAAATATACTAATGGATGAATTACTGACAGCTAAGATATCTGATTTTGGATTGGCAAGGCTATCAAAGCCGGAATTTTCGAGAAATAGAGCAGACAAGGAGGTTACAACCGGGTACTTAGCACCTGAATGGCAAAAGGAGTTATTGGTATCAATTAAAGCTGATGTTTTCAGTTATGGTATAGTACTGTTGGAGATTGTATGCCGCAGAAGGAATATTGAATTAGATGTTCCATCATCAGAAGAGGTGCTTCTTTCTAGTTGGGCATATCATTGCTTTGCAACTGAGCAGTTACATAATCTTGTATCATATGAAGAGGAAGACATGGATTGGAAAACACTGGAAAGAATGCTCAAGGTGGGGCTGCTGTGTGTCCAAGACGACCCATCTCTGCGTCCTTCAATGAGGAATGTCATTTTGATGTTGGAAGGATGGAAAGATATTCCTATTCCCCCATCTCTGCGTACCTAA 2394 0.4361 MASNCIHVLFLWLSFCVALADNIDIFLDEIISPPNSSTEYSSSWVSSSGQFEFGFYHHGDGYAIGIWLKGGDGSKTVVWTAKRDDPPISSNSTLELTVDGLLLKQGSDVQGQVYVDTEPAGSASMLDSGNFVIYAQEGSSIVWQSFHHPTDTILGGQNLTIRNQLVSSISTSDRSTGHHFLAFQRDDNLVAYPINSSAESPDAYWSSNNLYQQEVEQLSLDTKGNLCFDDAFQCLVNNTNHQNQPHNTSSIYRATLDVDGNLRLYEHLFEDKEGSNITNLWQALSDECQIKGFCGINSYCSNTSGTARCQCYPGFIPSNNHTTGSNAMFLECKLNYSKDDCETSGDRNFLLYNIVSLEEMQWDGYPYWAKPMSMRACDKSCKTDCDCGAALYTNGQCSKYSLPLRYGRKAPNESDTGMALFKVPSGYVIRGNTTTSSPKNPNAIVNNRKGLILILASTLGSISFLCVLFVVSIFFTYRSQVHRFTKLSASSNLGFTEECSLRSFSFDELVKATSGFTEEVGRGSFGAVYRGTIGENNRRIAVKRMEKIADEGEREFRAEITAIARTHHRNLVKLLGFCIEGSRKLLVYEYVSNGSLANLLFKTKKHLPLKERLKIALDVARGVQYLHEECEVCIIHCNLKPQNILMDELLTAKISDFGLARLSKPEFSRNRADKEVTTGYLAPEWQKELLVSIKADVFSYGIVLLEIVCRRRNIELDVPSSEEVLLSSWAYHCFATEQLHNLVSYEEEDMDWKTLERMLKVGLLCVQDDPSLRPSMRNVILMLEGWKDIPIPPSLRT 797
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc181252g00041 797 SUPERFAMILY alpha-D-mannose-specific plant lectins 76 209 IPR036426 -
Stsc181252g00041 797 Gene3D - 31 148 IPR036426 -
Stsc181252g00041 797 PANTHER G-TYPE LECTIN S-RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE SD2-5 38 793 - -
Stsc181252g00041 797 FunFam S-receptor-like serine/threonine-protein kinase 484 590 - -
Stsc181252g00041 797 ProSitePatterns Protein kinases ATP-binding region signature. 520 543 IPR017441 GO:0005524
Stsc181252g00041 797 Pfam S-locus glycoprotein domain 244 318 IPR000858 GO:0048544
Stsc181252g00041 797 CDD EGF_CA 286 319 - -
Stsc181252g00041 797 SUPERFAMILY EGF/Laminin 286 322 - -
Stsc181252g00041 797 SUPERFAMILY Protein kinase-like (PK-like) 496 786 IPR011009 -
Stsc181252g00041 797 ProSiteProfiles Protein kinase domain profile. 514 787 IPR000719 GO:0004672|GO:0005524|GO:0006468
Stsc181252g00041 797 Gene3D Transferase(Phosphotransferase) domain 1 591 791 - -
Stsc181252g00041 797 ProSiteProfiles Bulb-type lectin domain profile. 29 146 IPR001480 -
Stsc181252g00041 797 Pfam D-mannose binding lectin 76 163 IPR001480 -
Stsc181252g00041 797 Gene3D Phosphorylase Kinase; domain 1 477 590 - -
Stsc181252g00041 797 FunFam Serine/threonine-protein kinase 149 277 - -
Stsc181252g00041 797 PIRSF SRK 1 797 IPR024171 GO:0004674
Stsc181252g00041 797 CDD STKc_IRAK 520 785 - -
Stsc181252g00041 797 ProSiteProfiles EGF-like domain profile. 284 321 IPR000742 -
Stsc181252g00041 797 FunFam Putative receptor-like protein kinase 591 790 - -
Stsc181252g00041 797 Gene3D - 149 287 IPR036426 -
Stsc181252g00041 797 SUPERFAMILY alpha-D-mannose-specific plant lectins 175 267 IPR036426 -
Stsc181252g00041 797 Pfam Protein tyrosine and serine/threonine kinase 516 781 IPR001245 GO:0004672|GO:0006468
Stsc181252g00041 797 SMART blect_4 35 149 IPR001480 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc181252g00041 Stsc-Chr181252 226890 230227 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc181252g00041 455 796 Receptor kinase-like Gene Family AT3G53380 37.143 9.55e-62 219
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_SD-2b Stsc181252g00041 PK_Tyr_Ser-Thr 3e-47 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc181252g00041 - - adu:107471486 880.937