Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc181252g00039 ATGGCTACCATTTCCATCATTCTTGTTCTGTTCTTGCTGCTAATCATACCAAATGAAGCCACAGCTAACAACATTATTGGCTTGGGCAAATCTCTATCTCCCAAAGCTAATAATAATAACAGCAATCCATCTTCATGGCTATCAAGTTCACGCTATTTTGCATTTGGATTTTATCCTCACCTTGATGGCTACGCTCTTGGAATATGGCTTCTCGACGCCGACAACACGGTGGTCTGGACCGCCAACCGCGATGGTTCGCCACTTCCATCTACCTCCACCTTGCAGCTAACCCCACATGGCTTGCTTCTCCGACAAGGACAAGAAGCACTCAACATCAATAGCTTTTCATTTTCAAACCTTGGACAAGAAGAAGCAGCTTCAGCTTCCATGCTGGACTCCGGTAACTTTGTGATCTATAATGCTTCCTATGGCGTTATATGGCAAAGTTTTGATCACCCAACTGACACCATTTTAGGAGGACAAAGGTTGAACAATGGAAACCAATTGGTCTCTGGTGTCTCCAAAACAGACCATGCATCAATAGGGCTTTTCTATCTCATCATGCAGAGTGATAACAACCTTGTCTCTTACCCTCTCAAAAGCCTCCCTCACCCATCTGATGCTTACTTTGCCACCGGCACCAACAACAATGCTCCTTTCACCTATCATCTCTACCTCAACCAAACTACAGGCTCTCTAATTCTCAGGAATGACACTAATTTGATGTTCGTTCATGATCTTCGTTATGATACTTCTTATGTTTTGGATGCTGAGAACGAGAACAACACAGCTATTTATCGTGCAACTCTGGATTTTGATGGAGTTTTTCGACTCTATGCTCATGACATGGTGGCTACCAAAGTCAGCAGCCCACTACGCAGTTGGCCTGATAATGCATGTTCAGTGAAGGGCTTCTGCGGGTTCAACAGTTATTGTGCACTGGCTGATGAGAATCCATTTTGCTATTGTCTTCCGGGATTTGATTTCCTTGATCCGAACCACAACACTCTTGGATGCAGAAGGAACTTCTCAGAAGACAAGTGTAATGAGAAAGCCACTTATAGAATGGTCCCTTTGGATAAACTGGTGTGGGCAGAGGGTGATCGATCTTATTTTCAGGCACAGATGCCAGCTGAGGAAGACTGCTCTTCTTCTTGTTTGAAAGATTGTAATTGTTGGGCTGCTTCTTATGATCAAAGTAACAACATTTGTATGAAGCAGCAAGCCCCTTTCAGATATGCAACAAGGGAACAGTCAAATGATAAAGTACCCTCCTTGAAATTCTTCAAGGTAGGAGACTTGAACTTGAATAATGTTACCCTTCACACTCCTAGTGACCCTGTGCCAGAGATTCTACCTTCTCCTCAGATCATCAAGACTACTAGTAACAAAGCAATTCTGCATATTATTCTTGTTACCTCCATTTTCGTTCTGATTTTCTGCTCTGCTGTTGGGATATCTTGCCATTTGATGTCCAAGATTCGAGTTCTCAAGTACAAGAGGCTCTTGGAGATTGGTGACTTGGGACTGAATGAGGAAGTGGCTTTGAGGAGATTTTCATACAGTGAGCTTAAGAGAGCAACCAATGGTTTCAAACAAGAACTGGGAAAGGGTGCTTTTGGAGCAGTGTACAAAGGGGTTTTAGACAAGGGAGGAAGAAGTAGGAGATTGATTGCTGTGAAGAGACTTGAGAAGTTGGTTGAAGAAGGAGAAAGAGAGTTCCAAGCAGAGGTGAGAGCCATTGGAAAAACACACCACAGGAACCTTGTTCGCTTGCTTGGCTTTTGTGCTGAGGGTTCCAAAAGGCTTCTGGTCTATGAACACATGAGCAATGGCTCCCTGGGGAAGCTTCTCTTTGGCAATGAAAGGCTTCCGGATTGGGATGAGAGAGTGAGAATAGCACTGGATATTGCAAGAGGGATCCTCTATCTGCATGAAGAATGTGAGGCTCCTATCATTCACTGTGACATAAAGCCACAGAATATCTTGATGGATGAGTTCTGGACTGCAAAAATATCTGATTTTGGGCTAGCGAAGCTTCTTATGCCGGATCAAACAAGAACCTTCACAGGAGTTAGAGGGACAAGAGGGTACTTGGCTCCTGAATGGAACAAGAACACACCAATAACAGTGAAGGCTGATATCTACAGCTATGGGATAGTGCTTCTTGAAACAGTGTGTTGCAGGAGAAGCTTAGATGTTAATGTGTTGGAGCCAAATGAGATTCTTCTGTCTGGTTGGGCATACAAGTGCTTTGTTGCTGGAGAGCTGCATAAGCTAGTTCATTGGGAAGAAGTAGATAAGAATGCTGTGGAAAATGTGGTGAAGGTGGCACTGTGGTGTATCCAAGATGAACCTATTCTCAGGCCTTCAATGAAGAGTGTGGTGCTCATGCTTGAAGGGGTTACTGATGTGGCAATTCCTCCTTGCCCCACTTCTGATTCCACGTGA 2451 0.4402 MATISIILVLFLLLIIPNEATANNIIGLGKSLSPKANNNNSNPSSWLSSSRYFAFGFYPHLDGYALGIWLLDADNTVVWTANRDGSPLPSTSTLQLTPHGLLLRQGQEALNINSFSFSNLGQEEAASASMLDSGNFVIYNASYGVIWQSFDHPTDTILGGQRLNNGNQLVSGVSKTDHASIGLFYLIMQSDNNLVSYPLKSLPHPSDAYFATGTNNNAPFTYHLYLNQTTGSLILRNDTNLMFVHDLRYDTSYVLDAENENNTAIYRATLDFDGVFRLYAHDMVATKVSSPLRSWPDNACSVKGFCGFNSYCALADENPFCYCLPGFDFLDPNHNTLGCRRNFSEDKCNEKATYRMVPLDKLVWAEGDRSYFQAQMPAEEDCSSSCLKDCNCWAASYDQSNNICMKQQAPFRYATREQSNDKVPSLKFFKVGDLNLNNVTLHTPSDPVPEILPSPQIIKTTSNKAILHIILVTSIFVLIFCSAVGISCHLMSKIRVLKYKRLLEIGDLGLNEEVALRRFSYSELKRATNGFKQELGKGAFGAVYKGVLDKGGRSRRLIAVKRLEKLVEEGEREFQAEVRAIGKTHHRNLVRLLGFCAEGSKRLLVYEHMSNGSLGKLLFGNERLPDWDERVRIALDIARGILYLHEECEAPIIHCDIKPQNILMDEFWTAKISDFGLAKLLMPDQTRTFTGVRGTRGYLAPEWNKNTPITVKADIYSYGIVLLETVCCRRSLDVNVLEPNEILLSGWAYKCFVAGELHKLVHWEEVDKNAVENVVKVALWCIQDEPILRPSMKSVVLMLEGVTDVAIPPCPTSDST 816
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc181252g00039 816 SMART serkin_6 529 799 IPR000719 GO:0004672|GO:0005524|GO:0006468
Stsc181252g00039 816 PANTHER G-TYPE LECTIN S-RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE SD2-5 37 811 - -
Stsc181252g00039 816 Pfam D-mannose binding lectin 76 164 IPR001480 -
Stsc181252g00039 816 ProSitePatterns Serine/Threonine protein kinases active-site signature. 652 664 IPR008271 GO:0004672|GO:0006468
Stsc181252g00039 816 FunFam Serine/threonine-protein kinase 153 290 - -
Stsc181252g00039 816 ProSiteProfiles Bulb-type lectin domain profile. 32 151 IPR001480 -
Stsc181252g00039 816 Gene3D - 154 291 IPR036426 -
Stsc181252g00039 816 SUPERFAMILY Protein kinase-like (PK-like) 515 800 IPR011009 -
Stsc181252g00039 816 Gene3D - 29 151 IPR036426 -
Stsc181252g00039 816 CDD STKc_IRAK 535 801 - -
Stsc181252g00039 816 SUPERFAMILY alpha-D-mannose-specific plant lectins 66 216 IPR036426 -
Stsc181252g00039 816 ProSiteProfiles PAN/Apple domain profile. 348 430 IPR003609 -
Stsc181252g00039 816 ProSitePatterns Protein kinases ATP-binding region signature. 535 561 IPR017441 GO:0005524
Stsc181252g00039 816 Pfam S-locus glycoprotein domain 257 328 IPR000858 GO:0048544
Stsc181252g00039 816 FunFam G-type lectin S-receptor-like serine/threonine-protein kinase 609 807 - -
Stsc181252g00039 816 SMART blect_4 37 153 IPR001480 -
Stsc181252g00039 816 PIRSF SRK 1 816 IPR024171 GO:0004674
Stsc181252g00039 816 Pfam Protein kinase domain 532 796 IPR000719 GO:0004672|GO:0005524|GO:0006468
Stsc181252g00039 816 ProSiteProfiles Protein kinase domain profile. 529 802 IPR000719 GO:0004672|GO:0005524|GO:0006468
Stsc181252g00039 816 Coils Coil 560 580 - -
Stsc181252g00039 816 FunFam S-receptor-like serine/threonine-protein kinase 506 608 - -
Stsc181252g00039 816 Gene3D Transferase(Phosphotransferase) domain 1 609 806 - -
Stsc181252g00039 816 Gene3D Phosphorylase Kinase; domain 1 501 608 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc181252g00039 Stsc-Chr181252 219041 221544 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc181252g00039 440 800 Receptor kinase-like Gene Family AT3G55550 39.674 7.94e-66 231
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_SD-2b Stsc181252g00039 Pkinase 2.1e-45 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc181252g00039 - - aip:107633068 980.704