Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Stsc181252g00018 | ATGGACGAAGCTTTATTGATGCGCAACACCGATTGCGTTTATTTCTTGGCATCTCCCCTCACTTGCAAGAAGGGAGCTGAATGCGAGTATCGGCATAATGAGATTGCGAGGCTTAACCCTAGGGATTGCTGGTACTGGTTATCTGGCAGTTGTCTCAATCCAACATGTGCTTTCAGACACCCTCCATTGGATTGCCAGACTGGAGTTTCATCTGAGCCAACACAGTCTGCCATACCTGCAAATAAAACAATGTTTCCATGTTATTTTTTCTTCAATGGATATTGCAATAAAGGAGACAGGTGCTCTTTTTTGCATGGGCATGATGATAGCTATTTCAATGTAAAGCCCGTAAAGAATGACAAGGGAGGCACTGATCCACCCAACCTAGAGAGTAAGGTGTCGTCGGGAACTGCCCCATCAACAACTGAAAATCATTCGAACCCAGCCTTAACTGCCCCAAAGGCTTTGCCCAGTGTCAAACCTCCACCTAAGGAAGATCTTCAACTATCCTTACCTAAAAATGTTCAACAGCAAGGTGATTGCGCTACATATGCTGTTGAGTATAAAGAAGATACAATTACTGGGTCAGAGCCTCCGTATCCAGATGGAAGATTTGTTCATAACATCTCTCATCATTGCAGTGAGCAGTGTTCAGAGGAGCAAGTAAATGGTCACATAGAGCCTGATGAACGTTGGGAATCATCATCCCCTGGATTTGATGTTCTTGTTCACAATGAGTTGGCGAACTTGGGCTATGAGGAGGATCCTGAATATCTTGCTGATGGGGAACATGAGGAACTGAATGAACAATACTTGGGGTATGAATTTGAAAACGCAGTTGAGTATGACAATATGTGCCGCAAAGCTGACGTCCTGTATGAGCAAGAAATGTATGATGATTATAGATGTTTAGATAGAGATCTTACTGATGCTAACGGCAGAAGAGTTTGTGATTGTTCCAGTGAGATAATCTTAGATTCTATGTTGAATAGGAAAAGGATTCGGATGAGTGATATAGCTACCTATGATGGGAAGTTAGATCTACGAGACCATCTGAGAAGACGAAGGGAAAGTAGTGGTCCTCCTGATGCAGGTTTCATCAGACGACATGAGTCCTCTTTGATGGTTCGAAACAGGGAAAGGCATCAAAGGCATTACAATGATCAGAGACTTAGGGGAAGATTGACTTCACAAGTGGGATTTACCAGTATAGACCCCATTGGAGAGGTTGAAAATCTTTCGGTTGCTAACAAGCAAAGGTTATTTAGAAATCCCCAGCAGCATTGGCCAAGGAAGCATTATAGAGAAAAGCCAGCTAAACGCCAGTTTCATTCATCTAATGACTCCAGGGGACCAGTTTACAAGCAAAGGAGGTTTATTCACGAGTCCTCTACATTTTCAGGACCCAAGAGCCTTGCAGAAATCAGAGAAGAGAAGAAAAAGGCTGAAGGAAGTTTTCACTGCAAAAGCAAATCATCTGATTTTCAGGACCCCAAACCTCTTAGTGAAATTCTCAAGGGCAAAAGGAGTGTGGACGGAGTTTCAGATGCCAATGGCTGA | 1560 | 0.4321 | MDEALLMRNTDCVYFLASPLTCKKGAECEYRHNEIARLNPRDCWYWLSGSCLNPTCAFRHPPLDCQTGVSSEPTQSAIPANKTMFPCYFFFNGYCNKGDRCSFLHGHDDSYFNVKPVKNDKGGTDPPNLESKVSSGTAPSTTENHSNPALTAPKALPSVKPPPKEDLQLSLPKNVQQQGDCATYAVEYKEDTITGSEPPYPDGRFVHNISHHCSEQCSEEQVNGHIEPDERWESSSPGFDVLVHNELANLGYEEDPEYLADGEHEELNEQYLGYEFENAVEYDNMCRKADVLYEQEMYDDYRCLDRDLTDANGRRVCDCSSEIILDSMLNRKRIRMSDIATYDGKLDLRDHLRRRRESSGPPDAGFIRRHESSLMVRNRERHQRHYNDQRLRGRLTSQVGFTSIDPIGEVENLSVANKQRLFRNPQQHWPRKHYREKPAKRQFHSSNDSRGPVYKQRRFIHESSTFSGPKSLAEIREEKKKAEGSFHCKSKSSDFQDPKPLSEILKGKRSVDGVSDANG | 519 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Stsc181252g00018 | 519 | Pfam | RNA-binding, Nab2-type zinc finger | 86 | 106 | - | - | |
| Stsc181252g00018 | 519 | ProSiteProfiles | Zinc finger C3H1-type profile. | 6 | 35 | IPR000571 | GO:0046872 | |
| Stsc181252g00018 | 519 | MobiDBLite | consensus disorder prediction | 117 | 167 | - | - | |
| Stsc181252g00018 | 519 | ProSiteProfiles | Zinc finger C3H1-type profile. | 81 | 108 | IPR000571 | GO:0046872 | |
| Stsc181252g00018 | 519 | Pfam | Zinc-finger containing family | 8 | 64 | IPR041686 | - | |
| Stsc181252g00018 | 519 | MobiDBLite | consensus disorder prediction | 128 | 151 | - | - | |
| Stsc181252g00018 | 519 | Gene3D | - | 74 | 186 | - | - | |
| Stsc181252g00018 | 519 | Gene3D | - | 6 | 63 | - | - | |
| Stsc181252g00018 | 519 | FunFam | Zinc finger CCCH domain-containing protein 17 | 1 | 63 | - | - | |
| Stsc181252g00018 | 519 | SUPERFAMILY | CCCH zinc finger | 81 | 106 | IPR036855 | GO:0046872 | |
| Stsc181252g00018 | 519 | PANTHER | ZN-FINGER, C-X8-C-X5-C-X3-H TYPE-CONTAINING | 1 | 512 | - | - | |
| Stsc181252g00018 | 519 | MobiDBLite | consensus disorder prediction | 467 | 519 | - | - | |
| Stsc181252g00018 | 519 | MobiDBLite | consensus disorder prediction | 430 | 452 | - | - | |
| Stsc181252g00018 | 519 | SMART | c3hfinal6 | 81 | 107 | IPR000571 | GO:0046872 | |
| Stsc181252g00018 | 519 | SMART | c3hfinal6 | 7 | 34 | IPR000571 | GO:0046872 | |
| Stsc181252g00018 | 519 | SMART | c3hfinal6 | 39 | 62 | IPR000571 | GO:0046872 | |
| Stsc181252g00018 | 519 | MobiDBLite | consensus disorder prediction | 472 | 510 | - | - | |
| Stsc181252g00018 | 519 | ProSiteProfiles | Zinc finger C3H1-type profile. | 37 | 63 | IPR000571 | GO:0046872 |
Duplication type information
| Select | Gene | Chromosome | Start | End | Duplicated_type |
|---|---|---|---|---|---|
| Stsc181252g00018 | Stsc-Chr181252 | 113690 | 116463 | Dispersed |
Transcription factors information
| Select | Regulatory Factors | Family | Gene | Hmm_acc | Hmm_name | E_value | Clan |
|---|---|---|---|---|---|---|---|
| TF | C3H | Stsc181252g00018 | zf-CCCH_3 | 6.1e-11 | CL0537 |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Stsc181252g00018 | - | - | adu:107469835 | 912.138 |