Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc181252g00014 ATGTCACCGACGAGATTCGCATCAAGCGATGCCATTGATGTGAGGCTTCTTCAACTTCCAATGAACAATGAACCATTGGACCCGCATTCGCATCTAGACCTAGCCCCTATGGCCAAGAGGCCAAGAACCTCAATGGAGAACCTCAATGATTCGCCAAGGACCATGATGAACACGGCAAACCCTTCAGGGAATAAAGGAACAAGCCACATTTTCTACAAGACCAGAATCTGCGCAAAGTTCAGGCTTGGAACTTGTAGGAACGGCGAGAACTGCAACTTCGCGCATGGCGCCGAGGATGTGAGGCAGCCGCCGCCTAACTGGCAAGAAATTGTTGGGTTGAGAGGCAATGACGAAAGGTCTTCGGGGAATTGGGATGATGATCACAAGATTATCCATAAGATGAAGCTGTGCAAGAAGTTTTACAATGGTGAGGAGTGTCCTTATGGTGAGAGGTGCAGTTTCCTTCATGAGGACCCTGGAAAGTTCAGGGAGGATTCGAGTTCTGCAAGATATAGGGATAGGGAGAGCTCAGTGATAAGCATAGGGACTAATGGTTCACCACCAAAGGGATATGGTGGTGGTGGTGATGGTGGTGGCTCTAGGTGTAATGATTCAGAAGGTGATGGTGGTAATAATAGGGCTGTGAACAATGGTAATGGTGGTGTGGGTGGGTTGAATGGTTCAAGGGGTTCTTCCAAGGGTACTTATTGGAAGACTAAGCTTTGTATCAAGTGGGAGACTACAGGGCACTGTCCTTTTGGCGGGGACTGTCACTTTGCCCATGGACAAGCAGAGTTGCAAACTCCCGGTGGACGCGCTGAAGCGGAAGTTGTCGGAGCCATTTCAGGTTCAACAAAGGCTGCCGTTCCAAATTTACCAAATGTTATATCATCGGTTCATGCCAGTGATGTGCACCCCATCAACACAGCAAGTGTACCTCCAGCGAATGCAGACGGGCAGGGTAGCAAGTCTCTGCTGAAGTGGAAAGAATTCAAGAAGATCAATCGGATTTACGGCGATTGGCTCGATGATTTCCCACTTGTGCACAACTTGCCAAGTAGAGTGGAGACCTGA 1074 0.4898 MSPTRFASSDAIDVRLLQLPMNNEPLDPHSHLDLAPMAKRPRTSMENLNDSPRTMMNTANPSGNKGTSHIFYKTRICAKFRLGTCRNGENCNFAHGAEDVRQPPPNWQEIVGLRGNDERSSGNWDDDHKIIHKMKLCKKFYNGEECPYGERCSFLHEDPGKFREDSSSARYRDRESSVISIGTNGSPPKGYGGGGDGGGSRCNDSEGDGGNNRAVNNGNGGVGGLNGSRGSSKGTYWKTKLCIKWETTGHCPFGGDCHFAHGQAELQTPGGRAEAEVVGAISGSTKAAVPNLPNVISSVHASDVHPINTASVPPANADGQGSKSLLKWKEFKKINRIYGDWLDDFPLVHNLPSRVET 357
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc181252g00014 357 FunFam Zinc finger CCCH domain-containing protein 231 268 - -
Stsc181252g00014 357 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 133 156 IPR000571 GO:0046872
Stsc181252g00014 357 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 72 96 IPR000571 GO:0046872
Stsc181252g00014 357 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 237 263 IPR000571 GO:0046872
Stsc181252g00014 357 SUPERFAMILY CCCH zinc finger 131 158 IPR036855 GO:0046872
Stsc181252g00014 357 Gene3D - 230 268 - -
Stsc181252g00014 357 Gene3D - 129 163 - -
Stsc181252g00014 357 Gene3D - 63 102 - -
Stsc181252g00014 357 ProSiteProfiles Zinc finger C3H1-type profile. 71 98 IPR000571 GO:0046872
Stsc181252g00014 357 FunFam Zinc finger CCCH domain-containing protein 66 102 - -
Stsc181252g00014 357 FunFam Zinc finger CCCH domain-containing protein 39 128 160 - -
Stsc181252g00014 357 SMART c3hfinal6 71 97 IPR000571 GO:0046872
Stsc181252g00014 357 SMART c3hfinal6 236 263 IPR000571 GO:0046872
Stsc181252g00014 357 SMART c3hfinal6 131 158 IPR000571 GO:0046872
Stsc181252g00014 357 ProSiteProfiles Zinc finger C3H1-type profile. 131 159 IPR000571 GO:0046872
Stsc181252g00014 357 MobiDBLite consensus disorder prediction 163 232 - -
Stsc181252g00014 357 MobiDBLite consensus disorder prediction 205 232 - -
Stsc181252g00014 357 ProSiteProfiles Zinc finger C3H1-type profile. 236 264 IPR000571 GO:0046872
Stsc181252g00014 357 SUPERFAMILY CCCH zinc finger 235 267 IPR036855 GO:0046872
Stsc181252g00014 357 SUPERFAMILY CCCH zinc finger 69 102 IPR036855 GO:0046872
Stsc181252g00014 357 PANTHER CCCH ZINC FINGER/TIS11-RELATED 43 167 IPR045877 GO:0003729
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc181252g00014 Stsc-Chr181252 98361 100372 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc181252g00014 238 267 C3H Transcription Factor Family AT1G68200 60.000 1.98e-06 47.0
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C3H Stsc181252g00014 zf-CCCH 2.3e-10 CL0537
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc181252g00014 - - gmx:100793865 411.379