Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc181252g00010 ATGTCAAGCCCACACACACTTTCCATCCATCCATCCATGGCTAATGAACCTGACTACGACAGCAGCTCCTCCTCTGTCACCACCACCACCACCCTCCCTGAATCCACCAGGAGCTGGATCAGCTTCACCAGCCTCCGCCGCCAGAGCTCAGTCTCCGTTTTCTCTACCTCCTCCGCCATCACAGACACACCTTTGTTCCTCACTCCTTCTTCCTCTTCTTCCCACCAAGCCAAGCCACACAAGGCCAACCAAGTTGCATGGGAGGCCATGCAGCGGCTCCTCAGCCACCACGGCCGAGTGGGGCTGGACCACTTCCGGCTCCTGAGGCGGCTGGGGAGCGGCGACATAGGGAACGTGTACCTTTGCCAGATAAGGAACCCCGTGGTGGGCCTTCCACAGTGCTTCTACGCCATGAAGGTTGTGGATAGAGAAGCACTTGCCATTAGGAAGAAGCTTCATAGAGCTGAGATGGAGAAGGAGATTCTTGGAATGCTTGATCACCCTTTCTTGCCAACTTTGTACACTCAGTTTGACGCTTCTCATTACTCTTGCTTGCTCATGGAGTTCTGCCCCGGCGGCGACCTTTACGCCGCCCGCCAACGCCAGCCTGGCAAGCGCTTTTCCATCGCTTCCGCCAAGTTTTATGGAGCGGAGACACTTTTGGCGGTAGAATATCTTCACATGATGGGGATAGTGTACAGAGATTTGAAGCCGGAGAACGTTCTGGTTAGAGAAGACGGCCACATAATGCTATCGGATTTCGATCTCTCTCTCAAATGCGACGTCGTTCCGAAGCTCTTAAGGACGAAAACCACCACCACATTCCAACGCACCATTAAAACCACAAAGACAAGTAGATCACCTTCCTGCGCCGCACCCATCCAGCCAGTACTCTCATGCTTCTCGCTGTCTTCATCAAGAAGCAAGAAACGCTCCCCGACGGTTACAACCGTCATAACAGAAAACGCTAATAACAACAACAACGAAGTAGTGGAGGAGCTAGATCCAGATCCAGAGCTTGTTGCTGAGCCAATAGAAGCAAGGTCGAAATCGTTCGTCGGAACGCACGAGTATTTGGCGCCGGAGGTGATCCTAGGTCAGGGACATGGCAGCGCCGTGGATTGGTGGACGTTCGGGGTGTTCTTGTACGAGATGCTGTACGGAAGAACGCCGTTCAAAGGGGAGAACAACGAGAAGACGCTGTTGAATATTCTGAAGATGCCGTTGGTGTTTCCGAGGATTGCGGTTAGTAGTAGCAAGGAGTATGAGGAGATGGTGAAGGTTCAAGATCTGATAGGCAAGCTTCTTGTGAAGAATCCAAACAAGAGGATTGGGAGTTGCACGGGTTCTGTTGAGATTAAGAGGCATGAGTTCTTTAAGGGTGTTAATTGGGCTTTAATTAGGTCTATTAAGCCACCTGAAGTGCCTAATAATCATATCAATAATAACATGGTTAGGAGTAGGGTTTTGATGCCTAGACTTACCAAGAAAGAATTAGATCAACCCTATAAGCTTAGTAATCATCATCATTTTGAATACTTCTAA 1545 0.5023 MSSPHTLSIHPSMANEPDYDSSSSSVTTTTTLPESTRSWISFTSLRRQSSVSVFSTSSAITDTPLFLTPSSSSSHQAKPHKANQVAWEAMQRLLSHHGRVGLDHFRLLRRLGSGDIGNVYLCQIRNPVVGLPQCFYAMKVVDREALAIRKKLHRAEMEKEILGMLDHPFLPTLYTQFDASHYSCLLMEFCPGGDLYAARQRQPGKRFSIASAKFYGAETLLAVEYLHMMGIVYRDLKPENVLVREDGHIMLSDFDLSLKCDVVPKLLRTKTTTTFQRTIKTTKTSRSPSCAAPIQPVLSCFSLSSSRSKKRSPTVTTVITENANNNNNEVVEELDPDPELVAEPIEARSKSFVGTHEYLAPEVILGQGHGSAVDWWTFGVFLYEMLYGRTPFKGENNEKTLLNILKMPLVFPRIAVSSSKEYEEMVKVQDLIGKLLVKNPNKRIGSCTGSVEIKRHEFFKGVNWALIRSIKPPEVPNNHINNNMVRSRVLMPRLTKKELDQPYKLSNHHHFEYF 514
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc181252g00010 514 SUPERFAMILY Protein kinase-like (PK-like) 82 487 IPR011009 -
Stsc181252g00010 514 PANTHER FLIPPASE KINASE 1-RELATED 27 482 - -
Stsc181252g00010 514 FunFam protein kinase PINOID 190 258 - -
Stsc181252g00010 514 ProSitePatterns Serine/Threonine protein kinases active-site signature. 231 243 IPR008271 GO:0004672|GO:0006468
Stsc181252g00010 514 SMART serkin_6 105 459 IPR000719 GO:0004672|GO:0005524|GO:0006468
Stsc181252g00010 514 FunFam protein kinase PINOID 2 103 189 - -
Stsc181252g00010 514 Gene3D Transferase(Phosphotransferase) domain 1 347 477 - -
Stsc181252g00010 514 Pfam Protein kinase domain 349 459 IPR000719 GO:0004672|GO:0005524|GO:0006468
Stsc181252g00010 514 Pfam Protein kinase domain 106 265 IPR000719 GO:0004672|GO:0005524|GO:0006468
Stsc181252g00010 514 CDD STKc_phototropin_like 103 476 - -
Stsc181252g00010 514 ProSiteProfiles Protein kinase domain profile. 105 459 IPR000719 GO:0004672|GO:0005524|GO:0006468
Stsc181252g00010 514 Gene3D Phosphorylase Kinase; domain 1 103 189 - -
Stsc181252g00010 514 Gene3D Transferase(Phosphotransferase) domain 1 190 276 - -
Stsc181252g00010 514 FunFam serine/threonine-protein kinase D6PK-like 347 477 - -
Stsc181252g00010 514 MobiDBLite consensus disorder prediction 1 30 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc181252g00010 Stsc-Chr181252 60621 62516 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc181252g00010 15 514 AGC Kinase Gene Family AT2G26700 57.885 0.0 590
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK AGC_RSK-2 Stsc181252g00010 Pkinase 2.8e-30 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc181252g00010 K08286 - gmx:100777988 701.049