Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc181252g00002 ATGGTTCATGATATGGAAGAAGAGATGATGGTGGTGGTGTGGTGGTGGGTGAAGGCAGTGTCGTTGAGTTGCCTAGTGGTGGTGGTGGCGCTGAGGGTGGCAGTGCTGCTGTGGTGGAGACCTATGAGGATTCAAGCCCATTTCTCAACACAAGGAATCAGAGGACCTCCTTATCGTTTCTTCATTGGTAACGTTAAGGAGTTAGTCTCCATGATGCTCAAGGCTTCCTCTCAACCCATGCCTTCCACTCACAACATTCTCCCTCGCGTCCTTTCCTTCTACCATCACTGGAAGAAAATCTACGGTTCAACATTCATAGTATGGTTTGGACCGACGGTTCGGCTCACGGTGTCTGATCCGGACCTTATCCGTGAAATCTTCACATCCAAGTCAGAATTGTACGAGAAGAACGACGCTCCCCCTCTTGTGAAGCAGCTTGAAGGCGATGGACTCCTCAACATCAAGGGAGAGAAATGGTCTCACCACCGCAGAATCATCTCTCCCACTTTTCACATGGAAAATCTCAAGCTCTTGATACCGGCCATGGGAGCAAGCGTGGTTGACATGTTGGACAAGTGGTCGCAAATCGGGGAGAAAGGTGAGGTGGAGATCGAAGTTTCCGAGTTCTTTCAGAACTTAACCGAAGAGGTTATTACGAGGACAGCATTCGGAAGCAGCTACGAAGACGGAAGAGCCATCTTTCGCCTTCAATCCCAACAAATGCTGTTAGCCGCCGATGCTTTCCAAAAAGTGTTCATTCCAGGTTACAGATTTTTTCCAACAAGGAGGAATATACAATCATGGAAATTGGAGAAGAAGATAAGGAGATCGTTGGTGAGGTTGATAGAGAAGAGGAGAGAGAGCAATGGTGGGAGTGAGAATAATAATAAAGGGGCGAAGGACTTGTTGGGGCTGATGATAGAGGCGTCGATGGGGAGGGGTAAGAATGGGAATAATAATAGTGGGAGTGTGACGGTGGATGACATAGTGGAGGAGTGCAAGACGTTCTTCTTTGCGGGCAAACAAACCACATCCAACATGCTGACCTGGACAACCATCCTTCTCGCTATGCACCCACACTGGCAGGTGCAGGCACGTGACGAGGTCCTCTCTATCTGTGGATCACGTGACCTCCCCACCAAGGACCATGTTGCCAAGCTCAAGACGCTGAGCATGATTGTAAACGAGTCCATAAGGCTATACCCACCCACAATCGCAACTCTAAGGCGGGCAAAAGCTGACGTGGACTTGGGCAGTTACAAGATACCACGTGGGACAGAGCTGTTGATCCCAATCCTGGCCGTCCATCACGATCAGGCGATGTGGGGCAACGACGTGAACGAATTCAATCCTGGCCGTTTCTCGGAGGGGGTTGTCCGAGCGGCAAAGCATCCAGTGGCGTTCATACCATTCGGTCTAGGTGTTCGCAGATGCATCGGACAAAACCTCGCCGTTCTACAAACGAAGCTAGCCCTGGCAATCATACTGCAGCGTTTTAGTTTCAGGTTGGCCCCAAATTATCAGCACGCACCAACGGTCCTCATGCTTCTCTATCCTCAGTATGGGGCCCCCGTCCTATTCCAGCCACTCCCCAAGAACCATCATCAAGATCAAGATCAACGCTCCTCATTCACCTAG 1638 0.5031 MVHDMEEEMMVVVWWWVKAVSLSCLVVVVALRVAVLLWWRPMRIQAHFSTQGIRGPPYRFFIGNVKELVSMMLKASSQPMPSTHNILPRVLSFYHHWKKIYGSTFIVWFGPTVRLTVSDPDLIREIFTSKSELYEKNDAPPLVKQLEGDGLLNIKGEKWSHHRRIISPTFHMENLKLLIPAMGASVVDMLDKWSQIGEKGEVEIEVSEFFQNLTEEVITRTAFGSSYEDGRAIFRLQSQQMLLAADAFQKVFIPGYRFFPTRRNIQSWKLEKKIRRSLVRLIEKRRESNGGSENNNKGAKDLLGLMIEASMGRGKNGNNNSGSVTVDDIVEECKTFFFAGKQTTSNMLTWTTILLAMHPHWQVQARDEVLSICGSRDLPTKDHVAKLKTLSMIVNESIRLYPPTIATLRRAKADVDLGSYKIPRGTELLIPILAVHHDQAMWGNDVNEFNPGRFSEGVVRAAKHPVAFIPFGLGVRRCIGQNLAVLQTKLALAIILQRFSFRLAPNYQHAPTVLMLLYPQYGAPVLFQPLPKNHHQDQDQRSSFT 545
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc181252g00002 545 PANTHER CYTOCHROME P450 FAMILY MEMBER 28 523 - -
Stsc181252g00002 545 Gene3D Cytochrome P450 38 534 IPR036396 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Stsc181252g00002 545 FunFam Cytochrome P450 734A1 38 531 - -
Stsc181252g00002 545 ProSitePatterns Cytochrome P450 cysteine heme-iron ligand signature. 471 480 IPR017972 GO:0005506|GO:0016705
Stsc181252g00002 545 PRINTS E-class P450 group I signature 98 117 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Stsc181252g00002 545 PRINTS E-class P450 group I signature 328 345 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Stsc181252g00002 545 PRINTS E-class P450 group I signature 478 501 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Stsc181252g00002 545 PRINTS E-class P450 group I signature 348 374 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Stsc181252g00002 545 PRINTS E-class P450 group I signature 213 231 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Stsc181252g00002 545 PRINTS E-class P450 group I signature 468 478 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Stsc181252g00002 545 PRINTS P450 superfamily signature 469 478 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Stsc181252g00002 545 PRINTS P450 superfamily signature 392 403 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Stsc181252g00002 545 PRINTS P450 superfamily signature 339 356 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Stsc181252g00002 545 PRINTS P450 superfamily signature 478 489 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Stsc181252g00002 545 CDD CYP734 91 524 - -
Stsc181252g00002 545 Pfam Cytochrome P450 91 511 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Stsc181252g00002 545 SUPERFAMILY Cytochrome P450 48 529 IPR036396 GO:0004497|GO:0005506|GO:0016705|GO:0020037
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc181252g00002 Stsc-Chr181252 4377 7909 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc181252g00002 5 537 Cytochrome P450 AT2G26710 71.695 0.0 801
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc181252g00002 K15639 - gmx:100780027 852.047