Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc181251g00053 ATGGGAGTGGCTCAGAACATTCAGGATGAGGAGACTTTGGAGATAGGAATGGAATACAGAACTGTATCTGGAGTCGCTGGACCGTTGGTTATCCTTGATAAAGTTAAGGGACCCAAATTTCAAGAGATTGTTAATATTCGCTTGGGAGATGGAAGTACTCGTCGTGGACAAGTTCTGGAAGTTGATGGCGAAAAGGCTGTTGTTCAGGTTTTTGAAGGTACATCTGGGATTGACAATAAATTTACAACAGTGCAATTTACCGGAGAGGTGTTGAAAACTCCTGTCTCACTAGACATGCTTGGGCGCATATTTAATGGTTCTGGAAAACCAATTGATAATGGCCCACCAATTTTACCCGAGGCTTACTTGGACATATCAGGAAGTTCTATCAATCCTAGTGAGAGAACTTATCCTGAAGAAATGATACAGACAGGAATATCTACAATTGATGTCATGAATTCTATTGCTAGAGGTCAAAAGATCCCCCTGTTTTCAGCTGCTGGTCTCCCCCATAATGAAATTGCTGCACAGATTTGCCGTCAGGCTGGTTTAGTCAAGCGATTGGAGAAAACAGATAATCTTCTTGAGCATGGAGGAGAAGACGACAATTTTGCCATTGTGTTTGCAGCTATGGGAGTTAACATGGAGACTGCACAATTTTTTAAACGTGACTTTGAGGAAAATGGCTCAATGGAGAGAGTGACCCTTTTCCTTAATTTGGCAAATGATCCCACAATTGAGCGTATTATCACTCCTCGTATTGCTCTTACTACTGCTGAATATTTGGCCTATGAATGTGGCAAGCACGTTCTTGTGATACTCACAGATATGAGTTCTTATGCCGATGCTCTTCGTGAGGTGTCTGCTGCCAGAGAAGAAGTACCGGGAAGACGTGGTTATCCTGGTTACATGTATACTGATCTTGCAACAATTTATGAACGAGCTGGAAGAATTGAGGGTCGAAAAGGCTCTATTACACAAATTCCAATTCTAACCATGCCAAATGATGATATTACGCATCCAACTCCTGATCTTACAGGATATATCACTGAGGGGCAGATTTACATTGACAGGCAGTTGCATAACAGACAGATATACCCACCAATCAATGTGCTTCCATCACTCTCTCGGTTGATGAAGAGTGCCATTGGTGAGGGAATGACTAGAAAGGATCATTCTGATGTGTCCAACCAGCTATATGCAAATTATGCCATTGGAAAGGATGTCCAGGCAATGAAAGCCGTGGTTGGAGAAGAAGCACTTTCATCGGAGGATCTGCTGTATCTGGAATTCTTGGACAAGTTTGAGAGGAAGTTTGTCGCCCAGGGAGCCTATGATACTCGCAATATCTTCCAGTCACTAGATCTCGCATGGACTTTGCTGCGGATTTTCCCCCGAGAGCTGCTTCATCGTATTCCAGCCAAGACTCTGGATGCTTTCTACAGCCGTGATGCAGGTAACTGA 1464 0.4331 MGVAQNIQDEETLEIGMEYRTVSGVAGPLVILDKVKGPKFQEIVNIRLGDGSTRRGQVLEVDGEKAVVQVFEGTSGIDNKFTTVQFTGEVLKTPVSLDMLGRIFNGSGKPIDNGPPILPEAYLDISGSSINPSERTYPEEMIQTGISTIDVMNSIARGQKIPLFSAAGLPHNEIAAQICRQAGLVKRLEKTDNLLEHGGEDDNFAIVFAAMGVNMETAQFFKRDFEENGSMERVTLFLNLANDPTIERIITPRIALTTAEYLAYECGKHVLVILTDMSSYADALREVSAAREEVPGRRGYPGYMYTDLATIYERAGRIEGRKGSITQIPILTMPNDDITHPTPDLTGYITEGQIYIDRQLHNRQIYPPINVLPSLSRLMKSAIGEGMTRKDHSDVSNQLYANYAIGKDVQAMKAVVGEEALSSEDLLYLEFLDKFERKFVAQGAYDTRNIFQSLDLAWTLLRIFPRELLHRIPAKTLDAFYSRDAGN 487
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc181251g00053 487 PANTHER V-TYPE PROTON ATPASE SUBUNIT B 8 484 IPR022879 -
Stsc181251g00053 487 Pfam ATP synthase alpha/beta family, beta-barrel domain 22 88 IPR004100 GO:0046034|GO:1902600
Stsc181251g00053 487 Gene3D - 27 486 - -
Stsc181251g00053 487 NCBIfam V-type ATPase subunit B 18 485 IPR005723 GO:0033180|GO:0046961|GO:1902600
Stsc181251g00053 487 Hamap V-type ATP synthase beta chain [atpB]. 16 485 IPR022879 -
Stsc181251g00053 487 CDD ATP-synt_V_A-type_beta_C 386 480 - -
Stsc181251g00053 487 CDD V_A-ATPase_B 90 384 - -
Stsc181251g00053 487 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 92 382 IPR027417 -
Stsc181251g00053 487 CDD ATP-synt_V_A-type_beta_N 18 89 - -
Stsc181251g00053 487 Pfam ATP synthase alpha/beta family, nucleotide-binding domain 145 376 IPR000194 GO:0005524
Stsc181251g00053 487 PIRSF V-ATPsynth_beta/V-ATPase_B 9 487 IPR022879 -
Stsc181251g00053 487 ProSitePatterns ATP synthase alpha and beta subunits signature. 367 376 IPR020003 GO:0005524
Stsc181251g00053 487 FunFam V-type proton ATPase subunit B, brain 27 487 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc181251g00053 Stsc-Chr181251 286880 291896 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc181251g00053 1 487 Primary Pumps ATPases(2) AT4G38510 96.311 0.0 961
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc181251g00053 K02147 - gmx:100814088 939.488