Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc181251g00033 ATGCAATCTATCCGAAAATCCTTCAAATCCTATGCTTCCTACAACAAAAATTCACGAAGGTTTGGCGCTTCGGGAGGACCCGATTCCACTCACGAACACCTTCCAATTCTTCACGATCAAGAACCGCAGTACCATCACCACCACCACCACTCTGACCCTCCGCCGTCTTCCTCCATGGCCGGCGACTACGTCGTCAAGATCACTGACGGCGCGGATACGTCCGCCGGAGGAACTAACAAGATTTGGAGAGGCTCCAGCTACGATTTCTGGGCTGACGATGGAGGCTCTGGTGACAATGCAGGTTCTAAAGAGGAGAGCTTTGATTTCCGACACTCTGGTGCGCCGCCGCTGCCGGAGGAGGACCCGCCGTCGCAGCTGATCGGGAGCTTCCTGCGCAAGCAGATTGCCTCCGGTGAGATCTCGTTGGACATGGACATGGACATGGAGGAGCTTCAGCGGAACTACGACGCCGGTGCAAGTACCGCCGGAGGAGGAGGGAAGCTTTCGCCGGTGGAGGAGTCTCCGACGGTGAGCATGAACAACCGCGCATCCAAGGAGCTCAAGGTTTCGTTCGAAGAACCCGCGCCACCGCCGAATTTGACGGTGGAGATGACGAATAACTCCGATGCCGTGAGAAGAAGACACAGCCGGGATTTGTCGTCGACGATGGGAAACTTCCAACGGCCACCGCAGCCGCCAGGTGGATCTCCGTCTCGCGCCGGGATCAGTGGTGGTAACGGTAACGGTATCGACGACGGCGAGGTTGTGAGGTGCACCTCTAACGGTTCCGTTGAGAGAACCCTTTCCATGCAGAGCAGAAAATCAACGTTGTTGAAGGCGAAAACCCGGTCCAGGTTGATGGACCCGCCAGATGAACCGGAAAGAAAATCGGGTCGGATCATGAAGTCGGGTCAGCTGTTCTCCGGGTTGCTTGGGAAGAAGAAGGGTGGTGGTGATGACGACGACGATGACGACGATCCCTTTTTGGAAGAGGATCTTCCTGACAAGTATAAAAACACTCACTTTAGTTTATGGGTTTTGATTGAATGGTTGGTGTTGATTTTGATCATTGCTGCACTGGTTACAACTCTGAGTGTTCCTTTCTTGAGGGAGAAGAATCTTTGGCAGCTGAAGCTGTGGAAATGGGAGGTTATGATTCTTGTGTTGATATGTGGAAGGTTGGTGTCTGGTTGGCTTATCAGGGTAGCTGTGTTCTGCATTGAGAGGAACTTCCTTTTGAGGAAGAGGGTTCTGTATTTTGTGTATGGTGTGAAGCATGCTGTTCAGAATTGTGTTTGGTTAGGGCTTGTTTTGATAGCTTGGCATTTCTTGTTTGATCAGAAGGTTCAGAGAGAGACTCATAGCAATTTCCTTGAGTATGTTACCAAGATTTTGGTCTGCTTCTTGGTTGGTACTCTTGTTTGGTTGGTTAAGACACTTATGGTTAAGGTTCTGGCCTCTAGCTTCCATGTTAGCACATACTTTGATAGGATTCAAGAGTCGCTGTTTAATCAGTTTGTGATTGAGACACTCTCGGGTCCGCCTTTGGTCGAGCTTCAGCAGATTGAGGATGAGGAGCAGAAGATTCTTGAAGACGTCGAGAAGCTACAGAAAGCTGGGGTTACCATACCTCCTGAGCTGAGGGCTACTGCCTTCTCGACGAACAAGAGTGGAAAATTGAGGAGTGGGATGCTCCAGAAAAGCCCCAGGATGGTTAGTGGGCGATTCTCGAGACCTCTATCCAAGAAGTCAGAGGAGGGGAATGGTGGGATAACTATTGATCACCTGCATAAGCTGAATCCGAACAATGTCTCCGCCTGGAATATGAAAAGGCTAATCAATATGGTTCGGCATGGGGCTCTAACTACATTGGATGAACAGATACTTGACTCGGCCCATGATGATGAGAATGCCACGCAGATTAGAAGCGAAAATGAGGCAAAAGCAGCAGCCAAGAAAATTTTTCAGAATGTTGCTTGTGGTGGAAGGTTCATATACAAGAAGGACTTGCTGCGATTTATGCAAGAAGATGAAGTTGTGAAAACCTTGAGTCTCTTTGAAGGTGCAACTGAGACCGGAAGAATAAGCAAATCATCCTTGAAGAACTGGGTGGTCAATGCCTTTAGAGAGAGGAGAGCACTTGCGTTGACATTGAATGATACGAAAACGGCGGTGAACAAACTTCATCGAATGCTCAATTTCTTAGTTGCCATTATCATCCTAGTTATCTGGCTCTTGATATTGGGAATCGCCACCACCAAGTTTCTCCTCTTTGTGAGCTCGCAGCTTGTCTTGGTTGCATTCATATTTGGAAATACCTGCAAGACCATATTTGAAGCCATTATTTTCTTGTTTGTAATGCACCCGTTCGACGTTGGAGATAGATGCGAAATTGATGGAGTCCAGATGGTCGTAGAGGAAATGAACATACTGACCACCATATTTCTGAGATATGATAATCTAAAGATAATGATCCCTAATAGCGTCCTTGCTACAAAGGCAATACACAACTTCTACCGCAGTCCTGACATGGGAGATTCTCTTGAGTTCCTTATTCATGTGGCTACACCATTGGAGAAGTTTGCTCAAATTAAGCACAGAATACAGAGTTACATTGATAACAAGAAGGAGCACTGGTATCCATCACCATTTATAGTCTTCAAGGATTGTGAAAACCTAAACATGATTCGGATTGCGGTTTGGCCAACCCACAGGATGAACTTCCAAGACATGGGAGAGAGATTCATAAGGAGGTCGTTGTTGATCGATGAGATAGTCAAGATTTTCCGGGAGCTTGACATACAATACCGGCTGCAGCCGATCGATATTAGTATTAGAAGCATGCCTACCACTTCTGAGCGTCTTCCACCGAGTTGGTCAACAATCACAAGTTGA 2895 0.4777 MQSIRKSFKSYASYNKNSRRFGASGGPDSTHEHLPILHDQEPQYHHHHHHSDPPPSSSMAGDYVVKITDGADTSAGGTNKIWRGSSYDFWADDGGSGDNAGSKEESFDFRHSGAPPLPEEDPPSQLIGSFLRKQIASGEISLDMDMDMEELQRNYDAGASTAGGGGKLSPVEESPTVSMNNRASKELKVSFEEPAPPPNLTVEMTNNSDAVRRRHSRDLSSTMGNFQRPPQPPGGSPSRAGISGGNGNGIDDGEVVRCTSNGSVERTLSMQSRKSTLLKAKTRSRLMDPPDEPERKSGRIMKSGQLFSGLLGKKKGGGDDDDDDDDPFLEEDLPDKYKNTHFSLWVLIEWLVLILIIAALVTTLSVPFLREKNLWQLKLWKWEVMILVLICGRLVSGWLIRVAVFCIERNFLLRKRVLYFVYGVKHAVQNCVWLGLVLIAWHFLFDQKVQRETHSNFLEYVTKILVCFLVGTLVWLVKTLMVKVLASSFHVSTYFDRIQESLFNQFVIETLSGPPLVELQQIEDEEQKILEDVEKLQKAGVTIPPELRATAFSTNKSGKLRSGMLQKSPRMVSGRFSRPLSKKSEEGNGGITIDHLHKLNPNNVSAWNMKRLINMVRHGALTTLDEQILDSAHDDENATQIRSENEAKAAAKKIFQNVACGGRFIYKKDLLRFMQEDEVVKTLSLFEGATETGRISKSSLKNWVVNAFRERRALALTLNDTKTAVNKLHRMLNFLVAIIILVIWLLILGIATTKFLLFVSSQLVLVAFIFGNTCKTIFEAIIFLFVMHPFDVGDRCEIDGVQMVVEEMNILTTIFLRYDNLKIMIPNSVLATKAIHNFYRSPDMGDSLEFLIHVATPLEKFAQIKHRIQSYIDNKKEHWYPSPFIVFKDCENLNMIRIAVWPTHRMNFQDMGERFIRRSLLIDEIVKIFRELDIQYRLQPIDISIRSMPTTSERLPPSWSTITS 964
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc181251g00033 964 Coils Coil 516 539 - -
Stsc181251g00033 964 MobiDBLite consensus disorder prediction 284 299 - -
Stsc181251g00033 964 PANTHER MECHANOSENSITIVE ION CHANNEL PROTEIN 5 158 959 IPR016688 -
Stsc181251g00033 964 SUPERFAMILY Sm-like ribonucleoproteins 779 838 IPR010920 -
Stsc181251g00033 964 MobiDBLite consensus disorder prediction 93 123 - -
Stsc181251g00033 964 FunFam Predicted mechanosensitive ion channel 789 838 - -
Stsc181251g00033 964 MobiDBLite consensus disorder prediction 157 299 - -
Stsc181251g00033 964 Pfam Mechanosensitive ion channel 731 935 IPR006685 GO:0016020|GO:0055085
Stsc181251g00033 964 Gene3D - 789 838 IPR023408 -
Stsc181251g00033 964 MobiDBLite consensus disorder prediction 260 277 - -
Stsc181251g00033 964 PIRSF Memb_At2g17000 38 964 IPR016688 -
Stsc181251g00033 964 MobiDBLite consensus disorder prediction 42 62 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc181251g00033 Stsc-Chr181251 186510 190567 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc181251g00033 56 960 Mechanosensitive Ion Channel Family AT1G53470 54.978 0.0 931
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc181251g00033 K22048 - gmx:102665658 1294.26