LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Stsc181251g00027	ATGGACCCTCCACTCCTACCGGAAATGCCCCTTTCCGACAAAGTTTCGAACTTTGATGAAGGTGACTCGTCTCACCACCGCCCGACAAGCGCGGTTACCGAGGAACCGGTCGCTGAAGGCGCGGAAGGTGTGAATGTGGATGAAAAGGAACAGCTTTTGAAGAGTGGTGATATTGGGTCTGAAGATTCCTCTCGCGTTCAAGAAGTTACTGCTGTTAGAAAGAGGCGCGGAAGAAAGACTTTAAAGGAGAGGCAGGAGGCCATGGAGATCGAGAAGAACAACAAGAAAGATGATGATTCTGCTGCCATGACTGTGAAAACGCGTCCTAGAACAAGTGTTAAGAGTTATGCTGAGTATGCTCAGGAAGAAGAAGATGATGAGGGTGGGAAGAAGAGACGTGGGAGAAAACCGAAGAACCCGAAGAAGGAAGAACAACCTAGTAATGAGAACGATGTTCCAATTGCTGAAGATGAGTTAAAACCTTGTACAGATAACGATGGGGAAGATGCAAATGGTGATGATCCGAAGAAGAAGCGAGGTAGAGTTGGGGGAAGAAAACGTGGTGGTGGAAGAAGGAAGGGAGAAGATCGAAACCCTGGTGATTCTGAAAATGGCGATGGTCCAAAGAAGACTCCTGGTAGGAAAAGAAAGAATCTGGATGGTGATGAGGAAAAGTGTGATAATGTAAAGATGGAAAATGAGGAGTTGGGGTCTGATTCTAATGCTCAAATTAATGCTGAGACAACTTCAGAGATCCCTAGTAATGAGAACGATGTTCCAATTGTTGAAGATGAGTTAAAACCAAATACAGATAGCGAAGCGGAAGATGCAAATGGTGATGATCCAAAGAAGAAGCGAGGTAGAGTTGGGAGAAGAAAACGTGGTGGTGGAAAAAGGAAGGTAGAAGATCGAAAAGAAAGGAAAATCAGTAAGTTTACTGAAGAGGAGTGCCTAATGTGCCATCAATGTCAGAGGAATGATAAAGGCGGTGTCGTGAGGTGCAAGAAGTGTAAGACGAAAAGATATTGCCTGCCATGTATAGCCAATTGGTACCCCCATATGAAGCCAGATGATTTTGTTGAGTGTCCTGTGTGCCGCAAGAATTGTAATTGCAAAGCATGTCTGCGATCTACTGATCGGATTAAGGAATTGAAGGAGAAGAAGAAAGATTCCAGCAATCATGAACGAGTTGATTTCTCTTTGTATTTGCTAAAATGCATTCTTCCATATATAAAACAGTTGGATAAAGAACAAACTGCTGAGAAAGAGTTCGAAGCTAAAAGACAAGGGGTTTCACCCTTGGAGCTAAAAATTGAAAAGGCAAATTTTACACTACAAGAACGAGTCTACTGTGACAACTGCAAAACATCAATATTTGATTACCACAGAAGCTGTGAAACGTGCTCTTTTGACCTGTGTCTTAGCTGTTGCCATGAGCTTCGTAAAGGGCAGCTTCTAGGTGGTGCAGATCCAATAGAGTGGGGATTTGTCCAGCATGAAATAGATTATCTTCATGGTATTGTAAAAAAAAAGAGAAAAACCAATGGATCATGGGTTCAGACTCAAGGTGAGACTCAGGGATCACAGGTCATTCCTGAACCACATGCTAATGCTAACGTTGAGGATCGTGGGTGGTCAAGAGCTGGGTGGCATGCAGAGAGTGATGGTAGCATACCCTGCCCAAAAGTCACTGAGGAGTGCTGCAGTAGATTTCTGGAGCTGAAAAGCATATTTGGTCGAAATTTTATCTCAGAGTTAGTACACAAAGCAGATGAACTAGCAGAAGCTTATAAGCTTGAAGATTCAGTTGAGAATCCTGATAGCTGTTGCTCATGTTTGGCGATGGCAAACACTGATGACAAAAATAAAAACACAAGGAAGGCATCTTCCCGTGAAGATTCCAGTGACGACTTTTTATACTGCCCTTCAGCTGAAGATCTAAAGCATGATGGTGTAAAACATTTTCAGTGGCACTGGAGCAAAGGGGAACCTGTCATTGTCAGCAATGTGCTTGATTGTAAGAATGGTTTGAGCTGGGAACCACTTGTCATGTGGCGTGCATTTCGTCAGATAACTAACACAAAGGGTGCTATACATTTGGAGGTCAAGGCAATTGATTGCTTAGATTGGTGCGAGGGAGATATTAATATCCACCAATTCTTTACTGGCTATTCAACCGGACGTCAAGATTGGTATCCTCTAGCTGGTGCTCTTAATCTTGCTGTAAAGTTGCCTAAGAAATGTATAAAGCCAGACATGGGACCAAAAACGTATATTGCTTATGGATTTCCTGAAGAGCTTGGGCGTGGTGATTCTGTGACTAAGCTCCACTGCGATATGTCTGATGCAGTAAATGTGCTTACTCACATTTCTGAAGTGAAATTGGATTCTCAAGTACGTAAAGCGATTGAGGAATACAAAGCAAAGCACCTAGAGCAGGATCGGAGGGAGTTGTATGGAGCTCATGAGGAAGAAACTGGTGACATGCATAATGATTCATGTTCAACCATAGATGCTTCTGACAAGCAAAATGGTTTTCAAGTTGCGGAACATGAAACTGGATTATGTGACATGAAAGTGGATGAGCAGTTTCATCAGCCTTCTGGTAATAATGAGAGTATAGCTGTAAATATGGATGGCCATTCTTGTGGGTCAGAGCTTAAAGACGCTGAAAAAGTGGAAATAGAAAAAGAAAAAAGTATGTCGGACGCGTCAGATGCCACTGATGGTGCTCTCTGGGACATTTTTCGAAGACAGGATGTTCCGAAATTGCATGAGTATCTGAAAAATCATTTTAGAGAGTTTAGACATATACATTGCAATCCTTTGAAGCAGGTTACTCACCCCATCCATGATCAAACCATGTATTTGACTGAGGAGCATAAGAGGAAGCTTAAGGAGGAGTATGGAGTTGAGCCCTGGACTTTTGTTCAGAAGTTAGGAGAAGCTGTTTTCATTCCTGCAGGTTGTCCTCACCAAGTCAGAAATCTGAAGTCATGCATCAAGGTTGCCCTTGATTTTGTATCACCTGAAAATCTTGGTGAGTGCTTCCGTTTGACGGAGGAATTCCGCACACTCCCAATAAATCACAGGTCTTCTGAGGACAAGTTGGAGGTGAAGAAAATGACAGTATATGCAATGAAGGATGTGATTCAAAATTTGAAGGAAGCATGGTCTGGGAAAAGAAAGGTTCAGGATGTAGATACAGCTGTAACAGAATGA	3222	0.4274	MDPPLLPEMPLSDKVSNFDEGDSSHHRPTSAVTEEPVAEGAEGVNVDEKEQLLKSGDIGSEDSSRVQEVTAVRKRRGRKTLKERQEAMEIEKNNKKDDDSAAMTVKTRPRTSVKSYAEYAQEEEDDEGGKKRRGRKPKNPKKEEQPSNENDVPIAEDELKPCTDNDGEDANGDDPKKKRGRVGGRKRGGGRRKGEDRNPGDSENGDGPKKTPGRKRKNLDGDEEKCDNVKMENEELGSDSNAQINAETTSEIPSNENDVPIVEDELKPNTDSEAEDANGDDPKKKRGRVGRRKRGGGKRKVEDRKERKISKFTEEECLMCHQCQRNDKGGVVRCKKCKTKRYCLPCIANWYPHMKPDDFVECPVCRKNCNCKACLRSTDRIKELKEKKKDSSNHERVDFSLYLLKCILPYIKQLDKEQTAEKEFEAKRQGVSPLELKIEKANFTLQERVYCDNCKTSIFDYHRSCETCSFDLCLSCCHELRKGQLLGGADPIEWGFVQHEIDYLHGIVKKKRKTNGSWVQTQGETQGSQVIPEPHANANVEDRGWSRAGWHAESDGSIPCPKVTEECCSRFLELKSIFGRNFISELVHKADELAEAYKLEDSVENPDSCCSCLAMANTDDKNKNTRKASSREDSSDDFLYCPSAEDLKHDGVKHFQWHWSKGEPVIVSNVLDCKNGLSWEPLVMWRAFRQITNTKGAIHLEVKAIDCLDWCEGDINIHQFFTGYSTGRQDWYPLAGALNLAVKLPKKCIKPDMGPKTYIAYGFPEELGRGDSVTKLHCDMSDAVNVLTHISEVKLDSQVRKAIEEYKAKHLEQDRRELYGAHEEETGDMHNDSCSTIDASDKQNGFQVAEHETGLCDMKVDEQFHQPSGNNESIAVNMDGHSCGSELKDAEKVEIEKEKSMSDASDATDGALWDIFRRQDVPKLHEYLKNHFREFRHIHCNPLKQVTHPIHDQTMYLTEEHKRKLKEEYGVEPWTFVQKLGEAVFIPAGCPHQVRNLKSCIKVALDFVSPENLGECFRLTEEFRTLPINHRSSEDKLEVKKMTVYAMKDVIQNLKEAWSGKRKVQDVDTAVTE	1073

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Stsc181251g00027	1073	ProSiteProfiles	Zinc finger RING-type profile.	317	366	IPR001841	-
	Stsc181251g00027	1073	MobiDBLite	consensus disorder prediction	1	305	-	-
	Stsc181251g00027	1073	MobiDBLite	consensus disorder prediction	260	285	-	-
	Stsc181251g00027	1073	Pfam	JmjC domain, hydroxylase	911	1007	IPR003347	-
	Stsc181251g00027	1073	SUPERFAMILY	Clavaminate synthase-like	651	1043	-	-
	Stsc181251g00027	1073	Gene3D	Cupin	630	732	-	-
	Stsc181251g00027	1073	MobiDBLite	consensus disorder prediction	189	234	-	-
	Stsc181251g00027	1073	MobiDBLite	consensus disorder prediction	81	104	-	-
	Stsc181251g00027	1073	SMART	cupin_9	725	1024	IPR003347	-
	Stsc181251g00027	1073	MobiDBLite	consensus disorder prediction	124	179	-	-
	Stsc181251g00027	1073	MobiDBLite	consensus disorder prediction	42	56	-	-
	Stsc181251g00027	1073	Gene3D	Cupin	733	1033	-	-
	Stsc181251g00027	1073	ProSiteProfiles	JmjC domain profile.	733	1024	IPR003347	-
	Stsc181251g00027	1073	Coils	Coil	78	98	-	-
	Stsc181251g00027	1073	PANTHER	JMJC DOMAIN-CONTAINING HISTONE DEMETHYLATION PROTEIN	80	731	IPR045109	GO:0032454\|GO:0033169
	Stsc181251g00027	1073	MobiDBLite	consensus disorder prediction	235	256	-	-
	Stsc181251g00027	1073	FunFam	Transcription factor jumonji (JmjC) domain-containing protein	800	1033	-	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Stsc181251g00027	Stsc-Chr181251	133157	139396	Transposed

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	TR	Jumonji	Stsc181251g00027		JmjC	2.4e-15	CL0029

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Stsc181251g00027	K15601		-	gmx:100805723	1006.9