Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc181251g00023 ATGGAGAACGACACCGCCGCCACCAACACCAACGCCAACGCCACCGCCAAACTCGCAATTGCCGGAGCCAAATCAAACGGTCACAGCGAGGATGAGGACCGCTCCAATTTCAACAACGGCGTCGAGGAGCACATGGCGGAGCAAGTGGATGAAGAAGACGAAGAACAAGCAGAAGCAGAAGAAGACGATGGCGGTGACGAAGGCGGTGAAGGGGAACAAACTGGATCTGCTTCTCGGCAACCTTCGAGAACCCCTTTCACCAATCTCAGCCAGGTCGATGCTGACCTCGCCCTCGCCCGAACCCTTCAGGAACAGGAAAGGGCATACATGATGCTTAGAATGAATAATGAAGGTAGTGACTATGGAAGTTGGGAAGCTGGGAGTTATTTGCATGATGACGGAGATGATTTTGATGATCTGCATGATGGAACTGATCTGGATGAGGACGATGAGGAGGAGGAGGAGGACGACGATGATGGTGAGGAGGATTATGAGAATGAAGATGAAGATGCATTTGACGTCCATGCTCATGACGATGCTGGAGAACATGATAATCCTATTATTGAATTTGACCCTGATGTATTTTCAAGTGATGAAGCCTATGCAAGGGCATTACAAGAGGCTGAAGAGAGGGAAATGGCAGCTAGACTCCTGGCCCTTGCTGGGATTAATGACCGGGAGGCCGTGGACGCAGAGGAGCATGGTGCTAATTCTCAGGATGCATGGGAAGATGTTGATCCAGATGAACTTTCATATGAGGAACTACTGGCATTGGGTGAAGTAGTAGGAACTGAGAGCAGGGGTCTTTCAACCGATACTCTTGCCGGTCTGCCTTCAATCAAGTACAAGACTGGGAGTGATCAACATGGAAGCAATGATTCGTGTGTCATCTGCCGGATGGACTATGAGGATGATGAGTCTTTGACAGTTCTTTCCTGCAAACATCTGTACCATCCTGAGTGCATCAATAATTGGTTGAAAATAAACAAGGTTTGCCCTGTTTGCAGTACTGAGGTATCTGCTTCTGGGAGCAGCTAG 1038 0.4913 MENDTAATNTNANATAKLAIAGAKSNGHSEDEDRSNFNNGVEEHMAEQVDEEDEEQAEAEEDDGGDEGGEGEQTGSASRQPSRTPFTNLSQVDADLALARTLQEQERAYMMLRMNNEGSDYGSWEAGSYLHDDGDDFDDLHDGTDLDEDDEEEEEDDDDGEEDYENEDEDAFDVHAHDDAGEHDNPIIEFDPDVFSSDEAYARALQEAEEREMAARLLALAGINDREAVDAEEHGANSQDAWEDVDPDELSYEELLALGEVVGTESRGLSTDTLAGLPSIKYKTGSDQHGSNDSCVICRMDYEDDESLTVLSCKHLYHPECINNWLKINKVCPVCSTEVSASGSS 345
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc181251g00023 345 SUPERFAMILY RING/U-box 286 340 - -
Stsc181251g00023 345 MobiDBLite consensus disorder prediction 138 169 - -
Stsc181251g00023 345 MobiDBLite consensus disorder prediction 1 91 - -
Stsc181251g00023 345 Pfam Ring finger domain 293 335 IPR001841 -
Stsc181251g00023 345 SMART ring_2 295 335 IPR001841 -
Stsc181251g00023 345 FunFam E3 ubiquitin ligase BIG BROTHER-related 261 342 - -
Stsc181251g00023 345 MobiDBLite consensus disorder prediction 73 91 - -
Stsc181251g00023 345 ProSiteProfiles Zinc finger RING-type profile. 295 336 IPR001841 -
Stsc181251g00023 345 MobiDBLite consensus disorder prediction 26 40 - -
Stsc181251g00023 345 MobiDBLite consensus disorder prediction 117 170 - -
Stsc181251g00023 345 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 260 342 IPR013083 -
Stsc181251g00023 345 MobiDBLite consensus disorder prediction 46 69 - -
Stsc181251g00023 345 MobiDBLite consensus disorder prediction 1 16 - -
Stsc181251g00023 345 PANTHER E3 UBIQUITIN LIGASE BIG BROTHER-RELATED 39 344 IPR043312 -
Stsc181251g00023 345 Coils Coil 42 62 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc181251g00023 Stsc-Chr181251 116413 119607 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc181251g00023 1 239 C3H Transcription Factor Family AT3G19910 43.673 7.80e-35 125
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc181251g00023 K19045 - gmx:100787418 431.024