Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc181251g00019 ATGTCGTCCGGCGAGGCCGTCGTCGGCGGAGCCAAGCCCTACTTCTGCCACGTGTGCACTCGGAGAATCACCGTCTCCGATGAATCCGAGCCTTTCTGCCCGTTTTGCCTCCAAGGCTTCGTTGAAGAATACACCGATCCCAACCCTAATCCTAACCAAAACAACCCCTTCGGTTTCGGCTCCGATACTTCCTCTGATATGCAACTTCCTTTCCACCCGTTGTCCATCCTCCCTTTCCTTCTATCCTCTGCCGCCGCCTCCTCCACCACCATCGACCTCCAGAACCCTCGCTTCTTCTCCAGTTCCGCCGAATCCAGCCCCCGACCCCAGTTTGTTCAATCCGAAATGTTCGACCCGTTTATGTTTCTCCAGAATCATCTCCAAGGGCTTCGCGCCGACGGAGCAAATGTACAATTCGAGATCAACCACCCTTCGGAGCCAGGGTTTCGCCTTCCGGCGAACATCGGTGATTACTTCCTCGGTCCCGGCCTCGAGCAGTTGATTCAGCAGCTAGCCGAGAACGATCCCAACCGTTACGGTACCCCGCCGGCGTCAAAGACCGCCGTGGAGAATCTTCCGACGGTGACGGTGGACGACGAGTTGCTGAACTCAGAGCATAACGAGTGCGCGGTTTGCCAGGACGAGTTCGAGAAGGGGTCGCAGGTGAGGCAGATGCCTTGCAAACACGTCTATCACGATGATTGCTTGCTTCCGTGGCTTCAACTGCACAATTCTTGCCCTGTTTGCCGGTATGAATTGCCCACTGACGACCCTGATTATGAGAATCGGAATCGCCAGGGGGGCGACGGTGATGGTTCGAGGTCTGGCGGTGGCGGTGGCAATGGCAGTGGCGCTGATGGCAGCGGCAGCGGTGACGCTTCTGGGGGTAGACCTGTTCAGAGGACCTTTACGATATCTTTGAGGTACCCGTTTGGTTCGGGTGCGTCTCCTCAGGAAAGTAGCGACAGAGGATGGGGAAGTAGGCAAGAAGATTTGGATTGA 1002 0.5649 MSSGEAVVGGAKPYFCHVCTRRITVSDESEPFCPFCLQGFVEEYTDPNPNPNQNNPFGFGSDTSSDMQLPFHPLSILPFLLSSAAASSTTIDLQNPRFFSSSAESSPRPQFVQSEMFDPFMFLQNHLQGLRADGANVQFEINHPSEPGFRLPANIGDYFLGPGLEQLIQQLAENDPNRYGTPPASKTAVENLPTVTVDDELLNSEHNECAVCQDEFEKGSQVRQMPCKHVYHDDCLLPWLQLHNSCPVCRYELPTDDPDYENRNRQGGDGDGSRSGGGGGNGSGADGSGSGDASGGRPVQRTFTISLRYPFGSGASPQESSDRGWGSRQEDLD 333
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc181251g00019 333 Pfam zinc-ribbon 13 44 IPR039525 GO:0061630
Stsc181251g00019 333 Pfam Ring finger domain 207 250 IPR001841 -
Stsc181251g00019 333 MobiDBLite consensus disorder prediction 295 323 - -
Stsc181251g00019 333 SUPERFAMILY RING/U-box 188 257 - -
Stsc181251g00019 333 SMART ring_2 209 249 IPR001841 -
Stsc181251g00019 333 MobiDBLite consensus disorder prediction 254 268 - -
Stsc181251g00019 333 MobiDBLite consensus disorder prediction 253 333 - -
Stsc181251g00019 333 FunFam E3 ubiquitin-protein ligase RING1-like 170 256 - -
Stsc181251g00019 333 PANTHER E3 UBIQUITIN-PROTEIN LIGASE PRAJA 110 254 - -
Stsc181251g00019 333 CDD RING-H2_RNF126-like 208 250 - -
Stsc181251g00019 333 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 171 256 IPR013083 -
Stsc181251g00019 333 ProSiteProfiles Zinc finger RING-type profile. 209 250 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc181251g00019 Stsc-Chr181251 105037 107515 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc181251g00019 153 265 C3H Transcription Factor Family AT5G01980 48.673 1.17e-32 125
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc181251g00019 K11982 - gmx:100785289 352.058