Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Stsc181251g00019 | ATGTCGTCCGGCGAGGCCGTCGTCGGCGGAGCCAAGCCCTACTTCTGCCACGTGTGCACTCGGAGAATCACCGTCTCCGATGAATCCGAGCCTTTCTGCCCGTTTTGCCTCCAAGGCTTCGTTGAAGAATACACCGATCCCAACCCTAATCCTAACCAAAACAACCCCTTCGGTTTCGGCTCCGATACTTCCTCTGATATGCAACTTCCTTTCCACCCGTTGTCCATCCTCCCTTTCCTTCTATCCTCTGCCGCCGCCTCCTCCACCACCATCGACCTCCAGAACCCTCGCTTCTTCTCCAGTTCCGCCGAATCCAGCCCCCGACCCCAGTTTGTTCAATCCGAAATGTTCGACCCGTTTATGTTTCTCCAGAATCATCTCCAAGGGCTTCGCGCCGACGGAGCAAATGTACAATTCGAGATCAACCACCCTTCGGAGCCAGGGTTTCGCCTTCCGGCGAACATCGGTGATTACTTCCTCGGTCCCGGCCTCGAGCAGTTGATTCAGCAGCTAGCCGAGAACGATCCCAACCGTTACGGTACCCCGCCGGCGTCAAAGACCGCCGTGGAGAATCTTCCGACGGTGACGGTGGACGACGAGTTGCTGAACTCAGAGCATAACGAGTGCGCGGTTTGCCAGGACGAGTTCGAGAAGGGGTCGCAGGTGAGGCAGATGCCTTGCAAACACGTCTATCACGATGATTGCTTGCTTCCGTGGCTTCAACTGCACAATTCTTGCCCTGTTTGCCGGTATGAATTGCCCACTGACGACCCTGATTATGAGAATCGGAATCGCCAGGGGGGCGACGGTGATGGTTCGAGGTCTGGCGGTGGCGGTGGCAATGGCAGTGGCGCTGATGGCAGCGGCAGCGGTGACGCTTCTGGGGGTAGACCTGTTCAGAGGACCTTTACGATATCTTTGAGGTACCCGTTTGGTTCGGGTGCGTCTCCTCAGGAAAGTAGCGACAGAGGATGGGGAAGTAGGCAAGAAGATTTGGATTGA | 1002 | 0.5649 | MSSGEAVVGGAKPYFCHVCTRRITVSDESEPFCPFCLQGFVEEYTDPNPNPNQNNPFGFGSDTSSDMQLPFHPLSILPFLLSSAAASSTTIDLQNPRFFSSSAESSPRPQFVQSEMFDPFMFLQNHLQGLRADGANVQFEINHPSEPGFRLPANIGDYFLGPGLEQLIQQLAENDPNRYGTPPASKTAVENLPTVTVDDELLNSEHNECAVCQDEFEKGSQVRQMPCKHVYHDDCLLPWLQLHNSCPVCRYELPTDDPDYENRNRQGGDGDGSRSGGGGGNGSGADGSGSGDASGGRPVQRTFTISLRYPFGSGASPQESSDRGWGSRQEDLD | 333 |
Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Stsc181251g00019 | 333 | Pfam | zinc-ribbon | 13 | 44 | IPR039525 | GO:0061630 | |
Stsc181251g00019 | 333 | Pfam | Ring finger domain | 207 | 250 | IPR001841 | - | |
Stsc181251g00019 | 333 | MobiDBLite | consensus disorder prediction | 295 | 323 | - | - | |
Stsc181251g00019 | 333 | SUPERFAMILY | RING/U-box | 188 | 257 | - | - | |
Stsc181251g00019 | 333 | SMART | ring_2 | 209 | 249 | IPR001841 | - | |
Stsc181251g00019 | 333 | MobiDBLite | consensus disorder prediction | 254 | 268 | - | - | |
Stsc181251g00019 | 333 | MobiDBLite | consensus disorder prediction | 253 | 333 | - | - | |
Stsc181251g00019 | 333 | FunFam | E3 ubiquitin-protein ligase RING1-like | 170 | 256 | - | - | |
Stsc181251g00019 | 333 | PANTHER | E3 UBIQUITIN-PROTEIN LIGASE PRAJA | 110 | 254 | - | - | |
Stsc181251g00019 | 333 | CDD | RING-H2_RNF126-like | 208 | 250 | - | - | |
Stsc181251g00019 | 333 | Gene3D | Zinc/RING finger domain, C3HC4 (zinc finger) | 171 | 256 | IPR013083 | - | |
Stsc181251g00019 | 333 | ProSiteProfiles | Zinc finger RING-type profile. | 209 | 250 | IPR001841 | - |
Select | Gene | Chromosome | Start | End | Duplicated_type |
---|---|---|---|---|---|
Stsc181251g00019 | Stsc-Chr181251 | 105037 | 107515 | Dispersed/Transposed |
Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
---|---|---|---|---|---|---|---|---|
Stsc181251g00019 | 153 | 265 | C3H Transcription Factor Family | AT5G01980 | 48.673 | 1.17e-32 | 125 |
Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Stsc181251g00019 | K11982 | - | gmx:100785289 | 352.058 |