Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc181251g00002 ATGTCGGAGTCACCGTCTCAGCCACCGCCTCCTCCTCCAGCCCCCGAAGCGCCATCGTACTGGTGTTACCACTGCGATAAGCGTGTCCCCGTGGAGACACTCCCTGACCTACCTGACGTCATCTGCGGTGACTGCAAGAACGGCTTCGTGGAGTCCATCCCTACACCCTCTCTCCCTTCCTCTGCTGCCGCCTCCTCCTCCTCCGATNNNNNNNNNNACCCCTACTTCGGCTCTCACTTCCTCCACGTCCTCCGCCTAATCGCCCAGTCAGCGCGTGACGACGACGCGTCTCCTCCTCCTCCGCCTAGCCGCTCGCCGGAAAACGATTTCCTCCGGATCGAGCTCGGAGGTTGGGACAACGACGACGACGACGATGACGATGACGACGAAGAAAACGGCATCGAGTTTCACCACGGCGGCGAAGACCGCGAAAACGCAGTCGAGGAGCGAGGAGATCGAGTCGGCAACGAGGAGCCACACGGCGACGACGAAGATCTGCGGCGGAGGAGGCGCGAGCTGCTTCGTCTACGAATTAGGGATTTGGCGACGCGAACTAGGAGTATGCGGAACCGGATCTTGGATTGGGCCGACATCCTGATGGGCCTTGAAGACAACTCTATCGAGTTCCGCCTCCAGTTGCCGGATTCCGATCGCTACGTCGGAAACCCTGAGGACTACGTCGACGCGGCGGAGTACGAGGCGTTGCTTCAGACGCTGGCTGAGAGCGACGGAGGTGGGAGGAGAGGAGCTCCGCCTGCTGCAAAGTCTGCGGTGGAGGCGCTGCCGACGGTGAAGATCTCGTCGGAGAGCGAGGTGGTGGCGTGCGCCATATGCAAGGACATGGTTATCGTTGGTGACGTGGCGAAGAGATTGCCGTGCGGGCACGAGTACCATGGAGACTGCATTGTGCCGTGGTTAGGTTCTCGAAATTCGTGCCCTGTTTGCAGGTTTGAGCTTCCAACTGATGATAGAGACTATGAAGAAGACAAGAGGAAGAACAAGAGAGTCTTCAATTCTGGTAATGGTGCTTCTGGTTCTGGTGGCGGTGGAGGTGGAGGTGGAGGTGGTACCTTCTCTGGCTGA 1083 0.5882 MSESPSQPPPPPPAPEAPSYWCYHCDKRVPVETLPDLPDVICGDCKNGFVESIPTPSLPSSAAASSSSDXXXXPYFGSHFLHVLRLIAQSARDDDASPPPPPSRSPENDFLRIELGGWDNDDDDDDDDDEENGIEFHHGGEDRENAVEERGDRVGNEEPHGDDEDLRRRRRELLRLRIRDLATRTRSMRNRILDWADILMGLEDNSIEFRLQLPDSDRYVGNPEDYVDAAEYEALLQTLAESDGGGRRGAPPAAKSAVEALPTVKISSESEVVACAICKDMVIVGDVAKRLPCGHEYHGDCIVPWLGSRNSCPVCRFELPTDDRDYEEDKRKNKRVFNSGNGASGSGGGGGGGGGGTFSG 360
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc181251g00002 360 MobiDBLite consensus disorder prediction 118 132 - -
Stsc181251g00002 360 ProSiteProfiles Zinc finger RING-type profile. 275 316 IPR001841 -
Stsc181251g00002 360 Pfam zinc-ribbon 19 53 IPR039525 GO:0061630
Stsc181251g00002 360 MobiDBLite consensus disorder prediction 53 72 - -
Stsc181251g00002 360 MobiDBLite consensus disorder prediction 133 164 - -
Stsc181251g00002 360 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 243 322 IPR013083 -
Stsc181251g00002 360 MobiDBLite consensus disorder prediction 52 72 - -
Stsc181251g00002 360 PANTHER E3 UBIQUITIN-PROTEIN LIGASE PRAJA 151 320 - -
Stsc181251g00002 360 FunFam E3 ubiquitin-protein ligase RING1-like 238 322 - -
Stsc181251g00002 360 SMART ring_2 275 315 IPR001841 -
Stsc181251g00002 360 MobiDBLite consensus disorder prediction 90 164 - -
Stsc181251g00002 360 SUPERFAMILY RING/U-box 270 322 - -
Stsc181251g00002 360 Pfam Ring finger domain 275 316 IPR001841 -
Stsc181251g00002 360 MobiDBLite consensus disorder prediction 328 360 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc181251g00002 Stsc-Chr181251 3632 6036 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc181251g00002 186 332 C3H Transcription Factor Family AT5G01980 47.403 9.50e-36 134
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc181251g00002 - - gmx:100780991 442.195