Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc181250g00044 ATGTCCTTGAGAAGACAAGCTTCAATCTTGGTTTCTCTCAAACAAGGTTTTGAAGCCAACACCACTTCTATTTTGTCTTTGAAGACTTGGGACATGTCCAACTACATGTCCCTTTGTACTACTTGGGAAGGTGTCGAGTGCGACCACAGAAACAATCTTTCTGTGGTCGCACTTGACATCTCCAACCTCAACCTCTCCGGATCGCTTTCGCCGGCCATCACGGGGCTAAAAAGCCTTGTGAATGTCTCTGTGGCCGGCAACGCGCTCTCCGGAGAGTTCCCTAATGATATCCACAAGCTACCATTGCTTAGATTCTTGAACATATCCAACAACATGTTCAGTGGAGCTTTGAGTAGTTGGCAATTCAATCAACTCAAGGAGCTTGAGGTTCTTGATGCCTATGACAACATGTTCAATGGATCACTCCCTCTTGGTGTCACTGATCTCCATAGCCTCAAGTACTTGAACTTTGGTGGGAACTACTTCAATGGATCAATCCCTCCAAGCTATGGAACATTGTTTCAGCTCAATTATCTCTCTCTAGCAGGGAATGATTTGAGAGGCTTCATACCAGTTGAGCTTGGAAACTTAACCAACTTGACACAACTCTTCTTGGGATATTACAACCAATTTGATGGTGGAATCCCAAGAGAGTTAGGTAGGTTGACCAACCTGGTCCACCTGGACCTTGCGAACTGCGGCCTGCAAGGTCCAGTTCCGGCCGAGTTGGGCAACCTCAACAAGTTGGACACACTTTTCTTGCAGACCAATCAGCTGAGTGGAACAATCCCTCCTCAATTGGGGAATTTGAGCAGCTTGAAGTCTCTTGATCTTTCAAACAATGAGCTAACAGGTGAAATCCCAGTTGAGTTTCAAGGCCTAAAAGAGCTCACACTGTTGAACCTCTTCATCAATAGGTTGCATGGTGAGATCCCAATCTTCATTGCTGAGATGCCTAATCTGCAAGTGTTGAAGCTTTGGCAGAACAACTTCACTGGCTCAATTCCTTCAAGGCTTGGACAGAATGGTAAATTGACTGAACTTGATCTTTCAACAAACAAGCTCACAGGACTAGTTCCAAAGTCTCTTTGTTCTGGGAAGAAGCTCAAGATCCTGATATTGCTCAACAACTTTCTGTTTGGATCTTTGCCTAATGATCTTGGTGAATGCTACACTCTTCAGAGAGTTAGATTGGGACAGAACTACTTAACAGGTTCAATACCAAATGGGTTTCTCTATTTGCCTGAACTATCTCTTTTGGAACTTCAAAACAATTATCTTAGTGGCTTTCTTCCACATGATGATGAAACAAGAACTACTGATGCACCTTCATCAAAGCTAGGACAGCTGAATCTTTCGAATAATCGCTTGTCCGGGACCCTGCCGGATTCGATCGGAAAGTTTCCTAATTTGGAAATCCTTCTCCTTCATGGGAACAGATTCTCAGGTGAAATTCCACAAGATATAGGGAAGTTGAAGAGCATTCTCAAGATTGATTTGAGTGTTAACAACTTTTCAAGTACTATTCCTCCTGAGATTGGTAAACTTGCATTGCTGACATACTTAGATTTGAGCCAAAACCAGTTATCTGGTCCAATACCAATTCAGCTTTCTCAGATTCACATATTGAATTATCTTAATGTCTCATGGAACCATTTGAATCAGAGCCTTCCAAAGGAACTTGGATCCTTAAAAGGGTTAACTTCAGCAGATTTTTCTCACAACAATTTCTCTGGTTCAATCCCTCAAGTTGGTCAATTCTCAGTGTTCAATTCAACTTCCTTTGAAGGAAATCCTGAGCTATGTGGATATGACATGAATCCATGCAAAAATCCCTCATCACCATTGTCACAATCTCATGTCAAATCCAATTCAAAATCCGGGGTTCCGGGGAAGTACAAGCTTCTATTCGCGCTCGCCCTGTTAGCCTGCTCATTGGTGTTTGCCACCCTGGCAATCATCAAGAGCAGGAAATCACGGCGAGACGCGAATTCGTGGAAGCTAACAGCATTCCAGAAGCTTGAATATGGGAGTGAGGACATCTTAGGATGCATCAAAGAGAGCAATGTGATAGGAAGAGGTGGAGCTGGGGTTGTATATGGAGGAACAATGCCAAATGGAGAACAAGTAGCAGTTAAGAAGCTTCTAGGAATCAACAAAGGTTGCTCACATGACAATGGCTTATCAGCAGAGATTAAGACTCTAGGGAGAATCAGGCACAGGTACATTGTGAGATTGCTTGCATTTTGTTCAAACAAAGAGAACAACTTGCTTGTGTATGAGTACATGCCAAATGGAAGCTTAGGTGAAGTGTTGCATGGGAAAAGAGGTGAGTTTCTTGGATGGGAAACTAGGCTCAAGATTGCAACAGAAGCTGCTAAAGGGCTTTGTTATCTGCACCATGATTGTTCTCCACTCATCATTCATAGGGATGTTAAATCAAATAACATTCTGCTGAACTCTGATTTTGAGGCTCATGTTGCTGATTTTGGTCTTGCCAAGTTCTTGCATGACACTGGTGCTTCTCAATGCATGTCTTCCATTGCTGGTTCTTATGGCTATATTGCTCCAGAATATGCATACACATTGAAAGTGGATGAAAAAAGTGACGTGTATAGTTTCGGAGTGGTGTTGCTGGAGCTTCTAACCGGGAGAAGGCCGGTGGGCGGCGATTTCGGCGAAGAAGGGCTAGACATAGTTCAATGGACAAAGATTCAAACAAATTGGAACAAAGACAAGGTTATGAAGATCCTTGATGAGAGGCTAAACCAACACAATAAAATCCCAATGGATGAGGCAATGCAAGTGTTCTTTGTGGCAATGTTATGTGTTCAAGAACAAAGTGTGGAGAGACCAACCATGAGGGAAGTTGTTGACATGCTTGCTCAAGCAAAACAACCAAACACATTTCAAATCCAATGA 2922 0.4295 MSLRRQASILVSLKQGFEANTTSILSLKTWDMSNYMSLCTTWEGVECDHRNNLSVVALDISNLNLSGSLSPAITGLKSLVNVSVAGNALSGEFPNDIHKLPLLRFLNISNNMFSGALSSWQFNQLKELEVLDAYDNMFNGSLPLGVTDLHSLKYLNFGGNYFNGSIPPSYGTLFQLNYLSLAGNDLRGFIPVELGNLTNLTQLFLGYYNQFDGGIPRELGRLTNLVHLDLANCGLQGPVPAELGNLNKLDTLFLQTNQLSGTIPPQLGNLSSLKSLDLSNNELTGEIPVEFQGLKELTLLNLFINRLHGEIPIFIAEMPNLQVLKLWQNNFTGSIPSRLGQNGKLTELDLSTNKLTGLVPKSLCSGKKLKILILLNNFLFGSLPNDLGECYTLQRVRLGQNYLTGSIPNGFLYLPELSLLELQNNYLSGFLPHDDETRTTDAPSSKLGQLNLSNNRLSGTLPDSIGKFPNLEILLLHGNRFSGEIPQDIGKLKSILKIDLSVNNFSSTIPPEIGKLALLTYLDLSQNQLSGPIPIQLSQIHILNYLNVSWNHLNQSLPKELGSLKGLTSADFSHNNFSGSIPQVGQFSVFNSTSFEGNPELCGYDMNPCKNPSSPLSQSHVKSNSKSGVPGKYKLLFALALLACSLVFATLAIIKSRKSRRDANSWKLTAFQKLEYGSEDILGCIKESNVIGRGGAGVVYGGTMPNGEQVAVKKLLGINKGCSHDNGLSAEIKTLGRIRHRYIVRLLAFCSNKENNLLVYEYMPNGSLGEVLHGKRGEFLGWETRLKIATEAAKGLCYLHHDCSPLIIHRDVKSNNILLNSDFEAHVADFGLAKFLHDTGASQCMSSIAGSYGYIAPEYAYTLKVDEKSDVYSFGVVLLELLTGRRPVGGDFGEEGLDIVQWTKIQTNWNKDKVMKILDERLNQHNKIPMDEAMQVFFVAMLCVQEQSVERPTMREVVDMLAQAKQPNTFQIQ 973
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc181250g00044 973 SUPERFAMILY Protein kinase-like (PK-like) 680 961 IPR011009 -
Stsc181250g00044 973 ProSiteProfiles Leucine-rich repeat profile. 344 365 IPR001611 GO:0005515
Stsc181250g00044 973 Pfam Protein kinase domain 687 959 IPR000719 GO:0004672|GO:0005524|GO:0006468
Stsc181250g00044 973 FunFam Leucine-rich repeat receptor-like serine/threonine-protein kinase BAM3 210 315 - -
Stsc181250g00044 973 FunFam Leucine-rich repeat receptor-like serine/threonine-protein kinase 763 973 - -
Stsc181250g00044 973 PRINTS Leucine-rich repeat signature 516 529 - -
Stsc181250g00044 973 PRINTS Leucine-rich repeat signature 345 358 - -
Stsc181250g00044 973 Gene3D Phosphorylase Kinase; domain 1 656 762 - -
Stsc181250g00044 973 Gene3D Ribonuclease Inhibitor 266 343 IPR032675 -
Stsc181250g00044 973 PANTHER LRR RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE-RELATED 175 963 - -
Stsc181250g00044 973 SMART serkin_6 685 961 IPR000719 GO:0004672|GO:0005524|GO:0006468
Stsc181250g00044 973 SUPERFAMILY L domain-like 300 611 - -
Stsc181250g00044 973 Gene3D Ribonuclease Inhibitor 4 164 IPR032675 -
Stsc181250g00044 973 Gene3D Ribonuclease Inhibitor 165 265 IPR032675 -
Stsc181250g00044 973 Gene3D Transferase(Phosphotransferase) domain 1 763 972 - -
Stsc181250g00044 973 ProSitePatterns Serine/Threonine protein kinases active-site signature. 807 819 IPR008271 GO:0004672|GO:0006468
Stsc181250g00044 973 FunFam Leucine-rich repeat receptor-like serine/threonine-protein kinase BAM3 322 613 - -
Stsc181250g00044 973 Pfam Leucine Rich Repeat 344 364 IPR001611 GO:0005515
Stsc181250g00044 973 Gene3D Ribonuclease Inhibitor 344 613 IPR032675 -
Stsc181250g00044 973 Pfam Leucine rich repeat 248 307 IPR001611 GO:0005515
Stsc181250g00044 973 FunFam Leucine-rich repeat receptor-like serine/threonine-protein kinase BAM3 122 209 - -
Stsc181250g00044 973 FunFam Leucine-rich repeat receptor-like serine/threonine-protein kinase BAM1 654 762 - -
Stsc181250g00044 973 ProSiteProfiles Protein kinase domain profile. 685 969 IPR000719 GO:0004672|GO:0005524|GO:0006468
Stsc181250g00044 973 SMART LRR_typ_2 100 124 IPR003591 -
Stsc181250g00044 973 SMART LRR_typ_2 318 342 IPR003591 -
Stsc181250g00044 973 SMART LRR_typ_2 270 293 IPR003591 -
Stsc181250g00044 973 SMART LRR_typ_2 222 246 IPR003591 -
Stsc181250g00044 973 SMART LRR_typ_2 516 540 IPR003591 -
Stsc181250g00044 973 SMART LRR_typ_2 173 197 IPR003591 -
Stsc181250g00044 973 SMART LRR_typ_2 468 492 IPR003591 -
Stsc181250g00044 973 SMART LRR_typ_2 343 365 IPR003591 -
Stsc181250g00044 973 SUPERFAMILY RNI-like 58 380 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc181250g00044 Stsc-Chr181250 332632 337060 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc181250g00044 27 963 Receptor kinase-like Gene Family AT5G65700 58.999 0.0 1087
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-XI-1 Stsc181250g00044 Pkinase 7.2e-47 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc181250g00044 - - gmx:100816158 1553.5