Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc181250g00040 ATGCTAATCACAATCCTCAGGAAAACTTCTTCTACTTCTTCTGCTATCACGAGGCGCGCTCTCGCCGCCGCCATAGCCTCCACTACCGACCCCGTTCTCCATCGGGTCGGCTCTTCCTCCTCATCCTCCGCCGCCGTCGGTGAGCTGCGACGATTCTCCGGCTTAACTGGATTTTTGAAAGGGAGAGCTTTTCACCCTAATTCAGGGCCATTGAATTTCCGCTCTTCGTTCTGTTCTCGCGCGGAGTTTGCAGTTGAGGATTACGCCTACGAAGAAGTTTCTAGAGGGAACAGCGCCGATCAAGGTCTCGAGATCGCGAAGCTTGGGATTTCGCAGGATATTGTTTCTGCTCTTGCAAAGAAAGGAATCTTGAAGCTCTTTCCTATTCAGAAAGCTGTGCTTGAACCTGCTATGCAAGGACGTGATATGATTGGTCGAGCTAGAACAGGAACTGGAAAGACTCTTGCGTTTGGGATACCAATCATTGATAAGATCATTCAGTTCAATGCTAAGCATGGGCGAGGAAGGAACCCCTTGGCTTTGGTTTTGGCTCCTACCAGAGAGCTTGCACGACAGGTTGAGAAGGAATTCCAGGATGCGGCACCTAACTTGGATACCATCTGTGTTTATGGGGGTACACCCATCTCTCGACAGATGAGGCAGCTTGATTACGGTGTTGATATTGCTGTAGGCACGCCTGGTCGCATTATTGACCTTCTCAACAGAGGTGCTCTGAATNNNNNNNNNNTACAGGAAGTTCAGTTTGTTGTTCTCGATGAAGCTGATCAGATGCTACAAGTTGGCTTTCAGGAAGATGTTGAAAAGATCTTGGAGAGGTTGCCCCCTAAACGTCAAACTCTTATGTTCTCTGCAACAATGCCTTCTTGGATAAAGCAGATTACTCGTAATTACCTACAAGATCCCTTGACCATTGATCTTGTTGGAGAATCTGATCAGAAGTTGGCAGATGGAATTTCGCTATATTCTATTGCGACTGATAATTATGTTAAAGCAGGAGTTCTTGGACCTCTTATAACAGAACACGCAAAAGGGGGAAAATGCATTGTTTTCACTCAAACCAAACGTGATGCTGATCGATTAACTTATGCCATGGCAAAAACTGTTAAATGTGAGGCCTTGCATGGAGACATATCCCAAGCTCAGAGGGAAAGAACTCTGGCTGGATTCAGAAACGGATATTTTAACGTATTGGTTGCAACCGATGTTGCTTCACGTGGGCTTGATATACCAAATGTGGATCTTGTAATACACTATGATCTTCCCAATTCTTCAGAGATATTTGTTCATCGATCTGGACGAACAGGTCGTGCTGGTAAGAAAGGAACTGCTATTCTTGTTTATACGGATGATCAATCCAGGGCTGTTAGGACTATTGAGCGTGATGTGGGCTGTAGATTTTCAGAGCTACCAAGGATTGCTGTTGACCCTGGGTCAGTGGACATGGGTGGTGGACGATTTAGTTCTTATGGAGGTGGAAGGGACCGTCGATCTGGTGATTCAGGTTTTGGTCGTAGTTCTGGATTTGGTCGTTCGGGGGGCTATGGAAACTCTGGGTTTGGCCGGTCTAGCTATGGAAATTCTGGGTTTGGTGACTCTGGTATGAGCCGACCCAGAGGGGGATTTTCAGGTGATTCATCTGGTGGATCAGGCTTTGGTCGCTTTGGCTCCTCTGGTGGCTTTGGTTCAGGTCAATCAGGGAGCAGATCTGGAGGATTCGGTGGTTCAGGTGGTTTTGGTGGCTCTGATCGTTCAGGTGGTGGTTTTGGGGGATTTGGTGGTTCAGATCGTTCAGGTGGTTTTGGAGGTTTTGGCTCAAGTTAA 1842 0.4691 MLITILRKTSSTSSAITRRALAAAIASTTDPVLHRVGSSSSSSAAVGELRRFSGLTGFLKGRAFHPNSGPLNFRSSFCSRAEFAVEDYAYEEVSRGNSADQGLEIAKLGISQDIVSALAKKGILKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPIIDKIIQFNAKHGRGRNPLALVLAPTRELARQVEKEFQDAAPNLDTICVYGGTPISRQMRQLDYGVDIAVGTPGRIIDLLNRGALNXXXXQEVQFVVLDEADQMLQVGFQEDVEKILERLPPKRQTLMFSATMPSWIKQITRNYLQDPLTIDLVGESDQKLADGISLYSIATDNYVKAGVLGPLITEHAKGGKCIVFTQTKRDADRLTYAMAKTVKCEALHGDISQAQRERTLAGFRNGYFNVLVATDVASRGLDIPNVDLVIHYDLPNSSEIFVHRSGRTGRAGKKGTAILVYTDDQSRAVRTIERDVGCRFSELPRIAVDPGSVDMGGGRFSSYGGGRDRRSGDSGFGRSSGFGRSGGYGNSGFGRSSYGNSGFGDSGMSRPRGGFSGDSSGGSGFGRFGSSGGFGSGQSGSRSGGFGGSGGFGGSDRSGGGFGGFGGSDRSGGFGGFGSS 613
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc181250g00040 613 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 177 466 IPR027417 -
Stsc181250g00040 613 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 340 484 IPR001650 -
Stsc181250g00040 613 Gene3D - 104 315 IPR027417 -
Stsc181250g00040 613 PANTHER ATP-DEPENDENT RNA HELICASE RHLE-RELATED 100 485 - -
Stsc181250g00040 613 Pfam Helicase conserved C-terminal domain 344 445 IPR001650 -
Stsc181250g00040 613 Pfam DEAD/DEAH box helicase 127 299 IPR011545 GO:0003676|GO:0005524
Stsc181250g00040 613 MobiDBLite consensus disorder prediction 526 613 - -
Stsc181250g00040 613 SMART helicmild6 365 445 IPR001650 -
Stsc181250g00040 613 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 134 311 IPR014001 -
Stsc181250g00040 613 FunFam ATP-dependent RNA helicase RhlE 95 314 - -
Stsc181250g00040 613 CDD SF2_C_DEAD 325 454 - -
Stsc181250g00040 613 Gene3D - 339 483 IPR027417 -
Stsc181250g00040 613 CDD DEADc 114 312 - -
Stsc181250g00040 613 SMART ultradead3 122 328 IPR014001 -
Stsc181250g00040 613 MobiDBLite consensus disorder prediction 490 514 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc181250g00040 Stsc-Chr181250 300617 304369 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc181250g00040 108 477 Eukaryotic Initiation Factors Gene Family AT3G19760 33.422 5.04e-66 220
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc181250g00040 - - ahf:112702088 872.078