Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc181250g00035 ATGAAGCTTTCTTCCTCTGTGTTTAATCAACCAGCTGAAGAAGAAGGGGAGAAGAAAACTTTGAATTCAGAACTATGGCATGCATGTGCTGGCCCTCTAGTTTCTCTACCACCTGTTGGAAGTCGAGTAGTATACTTTCCTCAAGGTCACAGCGAGCAGGTAGCTGCTTCGACCAACAGGGAAGCAGATGCACATATTCCGAATTATCCTAACCTGCCGCCCCAGCTTATCTGTCAGCTCCACAACGTGACGATGCATGCCGATGCTGAAACAGATGAAGTATATGCTCAGATGACTCTGCAGCCTCTAAGTCCACAAGAACAAAAGGATTTGTATCTACTTCCGGCAGAACTGGGTGCTCCCAGCAAACAACCAACCAACTACTTCTGTAAGACATTAACCGCTAGCGATACCAGCACTCATGGAGGATTTTCTGTTCCTCGAAGAGCAGCTGAAAAAGTCTTTCCTCCTCTTGATTACTCACAGCAGCCTCCTGCTCAAGAACTGATTGCTAGAGATCTGCATGATAATGAATGGAAATTCAGACATATATTTCGAGGTTAG 564 0.4557 MKLSSSVFNQPAEEEGEKKTLNSELWHACAGPLVSLPPVGSRVVYFPQGHSEQVAASTNREADAHIPNYPNLPPQLICQLHNVTMHADAETDEVYAQMTLQPLSPQEQKDLYLLPAELGAPSKQPTNYFCKTLTASDTSTHGGFSVPRRAAEKVFPPLDYSQQPPAQELIARDLHDNEWKFRHIFRG 187
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc181250g00035 187 PANTHER AUXIN RESPONSE FACTOR 4-RELATED 17 187 IPR044835 GO:0003677|GO:0006355|GO:0009725
Stsc181250g00035 187 SUPERFAMILY DNA-binding pseudobarrel domain 114 187 IPR015300 -
Stsc181250g00035 187 CDD B3_DNA 128 187 IPR003340 GO:0003677
Stsc181250g00035 187 Gene3D - 127 187 IPR015300 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc181250g00035 Stsc-Chr181250 274984 276561 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc181250g00035 1 187 B3 DNA Binding Superfamily AT1G30330 88.830 1.97e-115 347
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3 Stsc181250g00035 None None None
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc181250g00035 - - gmx:100809105 377.096