Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc181250g00034 ATGCCATCATCAGTTCTGTCAAGTGATAGCATGCACATTGGTCTCCTTGCTGCTGCAGCTCATGCAGCTGCCACGAACAGCCGCTTTACCATATTCTATAATCCTAGGGCAAGCCCTTCTGAATTTGTCATTCCCTTGACCAAGTATGTTAAAGCAGTGTATCATACACGAGTTTCTGTTGGTATGCGATTTAGGATGCTCTTTGAGACAGAAGAGTCAAGTGTCCGTCGATATATGGGTACCATAACAGGCATTAGTGATTTAGATTCAGTCCGCTGGCCAAATTCACACTGGCGTTCTGTGAAGGTTGGTTGGGATGAGTCTACGGCAGGAGATAGGCAACCAAGAGTCTCCTTGTGGGAGATTGAGCCTTTGACGACATTCCCAATGTATCCATCTCCATTCCCCTTGAGGTTGAGGCGTCCATGGCCATCCGGACTGCCTTCTTTATACGGTCTCAAGGATGGTGGTGACATGGGCATTAATTCTCCTTTCATGTGGCTCCAAAGTGGGCTTGGGGATCAAGGAATGCCATCATTGAACTTCCAGGGGCTTGGCGTTACACCATGGATGCAACCGAGATTTGATGCTTCTATGCCAGGACTCCAACCGGAGTTATACCAAGCAATGACTTCTGCTGCTTTCCAGGAAATGAGGACGATGGATCCTTCGAAACCTTCGTCCCAATCTCCATTGCAGTTTCAGCAAGCTTCAAATGTTCCTTCTGCTTATGCATCTGAGTTACAGAGACAAGTGTTACCACAGTCTCAGCCCCAAAACACCCTTCTACAAAATTTTCAAGAATATCAAGCACCTGCACCGTCACAAGTTTCGCAACAGCAATTGCATCGTTACCACCCGTATAGCGATCAGCGGCAACAGCAGCAGCAACTAAAAAATGTGCCTGTTCAGCAGCAGTTACAAACTTTAGTCTCTCCTTTGTCTAATTTTGCGTCGGCTATACAGTCTCAATCTCCATCCTTGCTAGCCTTAGCTTCACATTGCCAGCAGCAGAGCTTTCCTGAGCCGATTAGAAATCATGTTTCAAGCTCTGATGTTTCCCCTATCCAAAGTCTACTAGGCTCATTCTCTCAGGATGGAGCATCGCAGTTACTTAACTTGAACGGACACAACTCTATCTTGTCTTCTGGGGCCTTACTGCCGAAGCAAATAGCTGTTGAACCTCAGCTACCATCAGCCGGTGCTCAGTGTGGATTGCCTCCTCAGGTGGAAAATTTGGGAACATCACAATCAAATGTGTCTCAGCTTACTACTTTGCCTCCATTTCCTGGAAGAGAGCATTCTGCATATCAAGGTGCAGTTGATGCTCATAGCAATCTTTTGTTTGGGATAAACATAGATCCTTCTTCTCTTATGCTGCAAAATGGCATTCAAAACCTGAGAAATATAGGCAATGTTAATGATTCACTGTCAGTGCCATTTTCTTCTGCAAATTGTGGTGGTGCCACTGGCACTGATTTCCCCCTAAGTTCAAACGTAACAGCTTCCAGTTGTGTCGATGAATCGGGATTCTTGCAGTCTTCTGAAAATGTAGACCAACCAAATACTCCAACTGGAACCTTTGTGAAGGTTCACAAGTCAGGGTCCTTAGGCAGGTCACTGGACATTTCGAAGTTCAGCAGCTATGATGAGCTGCGCAGTGAACTTGCTCGCTTATTTGGCCTCGAAGGCCAACTAGAGGATCCTCAGAGATCAGGCTGGCAGCTTGTAATCGTTGACCGAGAGAATGACATTCTCCTCCTTGGTGATGATCCCTGGCAGGAGTTTGTGAACAGTGTATGGTCCATTAAGATACTATCTCCACTTGAAGTTCAACAAATGGGGAAGGGTGTTGCTCCTTCTACTTCTGCCCCTTCAACTCAAAAGCCTTCTTCAACTGCTACTACTACCAATTCTTGTGACAGTAACTATGTTGTTGGTAAACAAGAGTTGAGAAGTTCTAGCAATGTTATGGCATCAATGGGGTCCCTTCACTATTAG 2001 0.4583 MPSSVLSSDSMHIGLLAAAAHAAATNSRFTIFYNPRASPSEFVIPLTKYVKAVYHTRVSVGMRFRMLFETEESSVRRYMGTITGISDLDSVRWPNSHWRSVKVGWDESTAGDRQPRVSLWEIEPLTTFPMYPSPFPLRLRRPWPSGLPSLYGLKDGGDMGINSPFMWLQSGLGDQGMPSLNFQGLGVTPWMQPRFDASMPGLQPELYQAMTSAAFQEMRTMDPSKPSSQSPLQFQQASNVPSAYASELQRQVLPQSQPQNTLLQNFQEYQAPAPSQVSQQQLHRYHPYSDQRQQQQQLKNVPVQQQLQTLVSPLSNFASAIQSQSPSLLALASHCQQQSFPEPIRNHVSSSDVSPIQSLLGSFSQDGASQLLNLNGHNSILSSGALLPKQIAVEPQLPSAGAQCGLPPQVENLGTSQSNVSQLTTLPPFPGREHSAYQGAVDAHSNLLFGINIDPSSLMLQNGIQNLRNIGNVNDSLSVPFSSANCGGATGTDFPLSSNVTASSCVDESGFLQSSENVDQPNTPTGTFVKVHKSGSLGRSLDISKFSSYDELRSELARLFGLEGQLEDPQRSGWQLVIVDRENDILLLGDDPWQEFVNSVWSIKILSPLEVQQMGKGVAPSTSAPSTQKPSSTATTTNSCDSNYVVGKQELRSSSNVMASMGSLHY 666
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc181250g00034 666 SUPERFAMILY CAD & PB1 domains 519 604 - -
Stsc181250g00034 666 Gene3D - 57 129 - -
Stsc181250g00034 666 ProSiteProfiles PB1 domain profile. 526 610 IPR000270 GO:0005515
Stsc181250g00034 666 MobiDBLite consensus disorder prediction 273 300 - -
Stsc181250g00034 666 Pfam AUX/IAA family 518 608 IPR033389 -
Stsc181250g00034 666 Gene3D - 523 615 - -
Stsc181250g00034 666 MobiDBLite consensus disorder prediction 616 640 - -
Stsc181250g00034 666 MobiDBLite consensus disorder prediction 219 240 - -
Stsc181250g00034 666 Pfam Auxin response factor 19 102 IPR010525 GO:0003677|GO:0005634|GO:0006355|GO:0009725
Stsc181250g00034 666 PANTHER AUXIN RESPONSE FACTOR 4-RELATED 1 616 IPR044835 GO:0003677|GO:0006355|GO:0009725
Stsc181250g00034 666 FunFam Auxin response factor 57 129 - -
Stsc181250g00034 666 FunFam Auxin response factor 522 615 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc181250g00034 Stsc-Chr181250 271387 274810 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc181250g00034 1 615 B3 DNA Binding Superfamily AT5G37020 47.428 6.03e-140 424
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc181250g00034 - - gmx:100810798 1078.54