Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc181250g00028 ATGAACAACAACAGCAGCACTATTCCTGGTTGGAACTTTGAGAGTGATGCCTGTGTCATCAATCAGAAGAGTCCAATAGGGCTGGACCAAGATCTTGTAGAGCTGCTATGGAAAAATGGGCAAGTAGTATTGAGCAGCCAAACACAAAGGAAACCAGTTCAGAAAAATGATGCATCAACAACAATTAGGAATAATGGTGTTCATTTTGGGAATTCAAGTAACAATTTGAGTCAACAAGAAGATGAGACTGCTTCATGGATTCAATACCAAGTTGATGATCATCCAATGGGCCAAGAACTTTGCTCATCAAATCTTCTATCTCAGTTAACACCTTGTGAAGTTGAGGCTTACAAGCCAATCAAGCAATTGGAAGAAGCAAAGTTTGCAAAATTTGCTACCCCAAATAATGCAAATTTAAATCCACAACAACAACAACAACAAAAACCAATAATAAATCCTATGCCTGCTCCAAGATTTGACTTTGTTGGTAGATCATCATCATCACCACAGAAGGTTCCAAAGTTTTCTCATCATTTCTCAGCACCCTTAATTGCACAACAAAAGTTTAGGGAGAAAGTTAATGGTGGTAACAACAATGTGCCACAAACTGAGGGGAGGGAGTGTTCAGTTATGACAGTTGGATCAAGCCACTGTGGCAGCAACAACATCATCCCTCAGGAACAAGATACCACTTTCTCTGAAGCAGTTAAAGATTGTTGTGTTCAGAGAAGTGTTCCTAATTGGAGTGGTAACAATAAGGGGAAATCTTCTGAGATGATTGAAGCAACTGTGACTTCATCTTCTGGTGGCTCAGGTAGTAGTCTTGGAAAAACAACTTGTTCTTTATCAACAGGAAATCATCTTGGCCTAAAGAGGAAAATCACAGATGCAGATGAATCAGAAGAACAAAGTGAGGCCACAGAGCCTAAATCAGGTGCTGGAAACAAAGCATCTCAGAGATCAGGATCTTCTAGAAGGAACCGTGCAGCAGAAGTGCATAACTTATCTGAAAGGAGAAGAAGAGATAGGATCAATGAGAAAATGAGAACACTCCAACAACTCATACCAAACAGTAATAAGACAGACAAAGCATCAATGCTAGAAGAGGCAATTGAATACTTGAAGTCACTTCAGTTACAGCTACAGGTGATGTGGATGGGGGCAGGGATGACACCAGTGATGTTTCCAGGGATTCAGCATTACATGTCACAGATGAGTGCAATGGGAATGGCTGCTGCAGCAACACAACAACCTTCTCTGCCTTCAATGCAAATACCAAGAATGCCCCTTGATCATCAATCCAACATCAACATGCCTTCTGTTTCTGTTTCTGTGCCACCATCAAGCCAGGCTTTGATGTGCCAAAATCCAGCAGTTTTGGGTGCATTTAATTACCAAAATCATCAGATGCAGAATCCATGCCTTGCAGAGCAATATGCACGTTACATGGCTTATCATCGTCTCATGCAAACTGCATCTCAGCCAATGAATGTATTTGGATATGGTTCCCAGGCTGTTCAACAGAGTAGTCAAGCAATGATGCCACCAAGCAATAGCAACAGCAATGGGGCTATGAATAATGTTCCACCTAATTTTGAAGATCATATCAATGCCAAAATGGGTTCTTCCACCTTTCAACAACTCAACATACAGTAA 1656 0.41 MNNNSSTIPGWNFESDACVINQKSPIGLDQDLVELLWKNGQVVLSSQTQRKPVQKNDASTTIRNNGVHFGNSSNNLSQQEDETASWIQYQVDDHPMGQELCSSNLLSQLTPCEVEAYKPIKQLEEAKFAKFATPNNANLNPQQQQQQKPIINPMPAPRFDFVGRSSSSPQKVPKFSHHFSAPLIAQQKFREKVNGGNNNVPQTEGRECSVMTVGSSHCGSNNIIPQEQDTTFSEAVKDCCVQRSVPNWSGNNKGKSSEMIEATVTSSSGGSGSSLGKTTCSLSTGNHLGLKRKITDADESEEQSEATEPKSGAGNKASQRSGSSRRNRAAEVHNLSERRRRDRINEKMRTLQQLIPNSNKTDKASMLEEAIEYLKSLQLQLQVMWMGAGMTPVMFPGIQHYMSQMSAMGMAAAATQQPSLPSMQIPRMPLDHQSNINMPSVSVSVPPSSQALMCQNPAVLGAFNYQNHQMQNPCLAEQYARYMAYHRLMQTASQPMNVFGYGSQAVQQSSQAMMPPSNSNSNGAMNNVPPNFEDHINAKMGSSTFQQLNIQ 551
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc181250g00028 551 CDD bHLH_AtPIF_like 328 391 IPR047265 -
Stsc181250g00028 551 PANTHER TRANSCRIPTION FACTOR PIF3 20 521 IPR044273 GO:0003700|GO:0006355
Stsc181250g00028 551 MobiDBLite consensus disorder prediction 47 81 - -
Stsc181250g00028 551 MobiDBLite consensus disorder prediction 295 342 - -
Stsc181250g00028 551 MobiDBLite consensus disorder prediction 244 282 - -
Stsc181250g00028 551 Gene3D - 323 384 IPR036638 GO:0046983
Stsc181250g00028 551 MobiDBLite consensus disorder prediction 307 325 - -
Stsc181250g00028 551 SMART finulus 334 383 IPR011598 GO:0046983
Stsc181250g00028 551 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 328 377 IPR011598 GO:0046983
Stsc181250g00028 551 FunFam Basic helix-loop-helix transcription factor 323 386 - -
Stsc181250g00028 551 Pfam Helix-loop-helix DNA-binding domain 332 378 IPR011598 GO:0046983
Stsc181250g00028 551 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 325 391 IPR036638 GO:0046983
Stsc181250g00028 551 MobiDBLite consensus disorder prediction 326 342 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc181250g00028 Stsc-Chr181250 230456 234488 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc181250g00028 10 527 Basic Helix-Loop-Helix Transcription Factor Gene Family AT2G43010 34.393 1.80e-57 197
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Stsc181250g00028 HLH 6.2e-15 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc181250g00028 K16189 - gmx:100811777 477.633