Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc181250g00021 ATGATCCCCAATTTTCTCATTTCAAGGTTAGCTTCTTCCTTCAAAACCCTAAACCTCAACAACCCCAAACCCCTATTCAATCTTCTTCAACACCACAAATCGCATCCCCTTTTCTTCAATTCACTCGCAAACCAAGTCACCCATCGCCGAAAAGATTCCAACTTTACAATCTCCTACCTAATCGCCACCTGCGGTTTCTCCCCCGAAACCGCCGCACAGTTGTCCCAAAAGGTTCACTTCCAAAGCCCTGAGAAGCCAAACGCGGTCTTAGCTCTCCTCAGAAAGTATGGATTCTCCGAAACCCAGATTTCTAAGTACATTCAGAAACGACCCATGTTGCTCATCACCAATGCCAATAAGATTATTTTGCCCAAGCTCAAGTTTTTATCCTCCATTGGGATTTCACGCGAAGACCTCCGAAAGCTTGTGATTGAGAACCATGGCCTGTTAGCTAGGAGCTTGGAGAAGTGCCTCATTCCTCGCTATGAGGTCCTCAAGAGTGTTGTTCGCAATGAGCGTGAGGTTGTTTGTTCCTTGAAGCGTGGTGCAATGGCTTTTGCTTTGTGTGATGTCATCAAGAATGTGGTTCCCAACACACAGGTTTTGAGAGATTTGGGTGTGCCTCAGAGTTCAATCTCAATGCTGGTTATGTTTCACCCAAGTGAGGCCTTCATGACTCATGCAAAGTTTGTTGAAGGTGTGAAGTTGGCAAAGGAAATGGGGTTTGATCCTATCAAGAGCAATTTCATCAGTGCTGTGCATGTGCTCTTGCATACCGATTCGGAGAAGATGGAGCGGAAGATGAAGTCTTTGGAGAAATGGGGTTGGTCGAAGGAGGTGTCCCTTAAATCTTTTAGGAAGTTCCCTACTTTTATGTCGTATTCGCCGGAGAGGATCAGCCGGGCCATGAGATTCTTGGTGGAGGATATGGGTTGGACTGCCGAGGACATCGCGAGGTTCCCCACAACTCTAGGATACAGCTTGGAGAAGAGGGTTATCCCTAGGTGCCATGTGATTAAGGTCTTGAAATCGAAAGGACTCGTTAAAGATCAGCTATGCTTGCCGACGTTCATGTGTGCGAAGGAGGAAGAGTTCTTGGAGTACTATGTGACCAAGTATCAGGAACAGGTGCCTCTTCTATCTAAGGTATATCAAGGTTTGGTTGATTATAAGGAGTTAATTTAG 1185 0.4599 MIPNFLISRLASSFKTLNLNNPKPLFNLLQHHKSHPLFFNSLANQVTHRRKDSNFTISYLIATCGFSPETAAQLSQKVHFQSPEKPNAVLALLRKYGFSETQISKYIQKRPMLLITNANKIILPKLKFLSSIGISREDLRKLVIENHGLLARSLEKCLIPRYEVLKSVVRNEREVVCSLKRGAMAFALCDVIKNVVPNTQVLRDLGVPQSSISMLVMFHPSEAFMTHAKFVEGVKLAKEMGFDPIKSNFISAVHVLLHTDSEKMERKMKSLEKWGWSKEVSLKSFRKFPTFMSYSPERISRAMRFLVEDMGWTAEDIARFPTTLGYSLEKRVIPRCHVIKVLKSKGLVKDQLCLPTFMCAKEEEFLEYYVTKYQEQVPLLSKVYQGLVDYKELI 394
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc181250g00021 394 SMART mt_12 140 171 IPR003690 GO:0003690|GO:0006355
Stsc181250g00021 394 SMART mt_12 247 277 IPR003690 GO:0003690|GO:0006355
Stsc181250g00021 394 SMART mt_12 314 348 IPR003690 GO:0003690|GO:0006355
Stsc181250g00021 394 SMART mt_12 282 313 IPR003690 GO:0003690|GO:0006355
Stsc181250g00021 394 SMART mt_12 104 135 IPR003690 GO:0003690|GO:0006355
Stsc181250g00021 394 PANTHER CGI-12 PROTEIN-RELATED 53 374 IPR003690 GO:0003690|GO:0006355
Stsc181250g00021 394 Pfam mTERF 255 365 IPR003690 GO:0003690|GO:0006355
Stsc181250g00021 394 Pfam mTERF 90 243 IPR003690 GO:0003690|GO:0006355
Stsc181250g00021 394 FunFam Mitochondrial transcription termination factor-like 154 377 - -
Stsc181250g00021 394 Gene3D Transcription termination factor 3, mitochondrial 171 378 IPR038538 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc181250g00021 Stsc-Chr181250 138855 140426 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR mTERF Stsc181250g00021 mTERF 8.2e-18 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc181250g00021 K15031 - gmx:100786641 357.066